|
| Status |
Public on Sep 23, 2022 |
| Title |
Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma |
| Organisms |
Homo sapiens; Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by array
|
| Summary |
Genome wide ATAC-seq profiling of medulloblastoma subgroups.
|
| |
|
| Overall design |
Multi-omics from medulloblastoma samples
|
| |
|
| Contributor(s) |
Smith KS, Northcott PA |
| Citation(s) |
36131015 |
| |
| Submission date |
Jun 30, 2022 |
| Last update date |
Sep 24, 2022 |
| Contact name |
Kyle S Smith |
| E-mail(s) |
kyle.smith@stjude.org
|
| Organization name |
St. Jude Children's Research Hospital
|
| Street address |
262 Danny Thomas Pl
|
| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38117 |
| Country |
USA |
| |
|
| Platforms (4)
|
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
| GPL21145 |
Infinium MethylationEPIC |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (68)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE209913 |
Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma [methylation] |
| GSE209915 |
Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma [scRNA-seq] |
| GSE209916 |
Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma [ATAC-seq] |
| GSE209917 |
Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma [atlas] |
| GSE209919 |
Unified rhombic lip origins of Group 3 and Group 4 medulloblastoma [OTX2_KO] |
|
| Relations |
| BioProject |
PRJNA862940 |
Less...
More...