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Series GSE207749 Query DataSets for GSE207749
Status Public on Jul 15, 2022
Title Functional neuronal circuitry and oscillatory dynamics in human brain organoids
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Human brain organoids replicate much of the cellular diversity and developmental anatomy of the human brain. However, the physiology of neuronal circuits within organoids remains under-explored. With high-density CMOS microelectrode arrays and shank electrodes, we captured spontaneous extracellular activity from brain organoids derived from human induced pluripotent stem cells. We inferred functional connectivity from spike timing, revealing a large number of weak connections within a skeleton of significantly fewer strong connections. A benzodiazepine increased the uniformity of firing patterns and decreased the relative fraction of weakly connected edges. Our analysis of the local field potential demonstrate that brain organoids contain neuronal assemblies of sufficient size and functional connectivity to co-activate and generate field potentials from their collective transmembrane currents that phase-lock to spiking activity. These results point to the potential of brain organoids for the study of neuropsychiatric diseases, drug action, and the effects of external stimuli upon neuronal networks.
 
Overall design Droplet-based single-cell RNA sequencing was performed on 7-month-old cerebral organoids
 
Contributor(s) Sharf T, Glasauer SK, Kosik KS
Citation(s) 35906223
Submission date Jul 08, 2022
Last update date Aug 16, 2022
Contact name Stella M. K. Glasauer
Organization name University of California Santa Barbara
Department Neuroscience Research Institute
Lab Kenneth S. Kosik Laboratory
Street address Biological Sciences II
City Santa Barbara
State/province CA
ZIP/Postal code 93106-5060
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (3)
GSM6311611 organoid 1
GSM6311612 organoid 2
GSM6311613 organoid 3
Relations
BioProject PRJNA856997

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE207749_RAW.tar 12.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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