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Status |
Public on May 24, 2024 |
Title |
Identify H3K4Me3 occupancy on genome in Setd1a Knock out (KO) mouse undifferentiated pleomorphic sarcoma cells |
Organism |
Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
As Setd1a is a methyltransferase targeting H3K4, we performed H3K4Me3 ChIP in control and Setd1a KO cell to observe the effects of Setd1a on H3K4Me3. Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for H3K4Me in control mouse UPS and Setd1a KO mouse UPS cells .
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Overall design |
Ga I Ban
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Contributor(s) |
Ou J, Alman B |
Citation(s) |
38989451 |
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Submission date |
Jul 18, 2022 |
Last update date |
Aug 02, 2024 |
Contact name |
jianhong ou |
E-mail(s) |
jianhong.ou@duke.edu
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Phone |
5084102796
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Organization name |
Duke University
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Department |
Cell Biology
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Lab |
Regeneromics
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Street address |
465 Nanaline Duke Building, Duke University Medical Center
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City |
Durham |
State/province |
North Carolina |
ZIP/Postal code |
27710 |
Country |
USA |
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Platforms (1) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (10)
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GSM6341914 |
Metastatic mouse UPS cell, H3K4Me3, rep1 |
GSM6341915 |
Metastatic mouse UPS cell, H3K4Me3, rep2 |
GSM6341916 |
Metastatic mouse UPS cell lacking Setd1a, H3K4Me3, rep1 |
GSM6341917 |
Metastatic mouse UPS cell lacking Setd1a, H3K4Me3, rep2 |
GSM6341918 |
Metastatic mouse UPS cell, IgG, rep1 |
GSM6341921 |
Metastatic mouse UPS cell, IgG, rep2 |
GSM6341922 |
Metastatic mouse UPS cell, IgG, rep3 |
GSM6341923 |
Metastatic mouse UPS cell lacking Setd1a, IgG, rep1 |
GSM6341924 |
Metastatic mouse UPS cell lacking Setd1a, IgG, rep2 |
GSM6341925 |
Metastatic mouse UPS cell lacking Setd1a, IgG, rep3 |
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This SubSeries is part of SuperSeries: |
GSE208367 |
COMPASS complex inhibition targets the metastasis initiating cell in undifferentiated pleomorphic sarcoma |
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Relations |
BioProject |
PRJNA859694 |
Supplementary file |
Size |
Download |
File type/resource |
GSE208365_RAW.tar |
851.7 Mb |
(http)(custom) |
TAR (of BIGWIG) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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