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Series GSE208365 Query DataSets for GSE208365
Status Public on May 24, 2024
Title Identify H3K4Me3 occupancy on genome in Setd1a Knock out (KO) mouse undifferentiated pleomorphic sarcoma cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary As Setd1a is a methyltransferase targeting H3K4, we performed H3K4Me3 ChIP in control and Setd1a KO cell to observe the effects of Setd1a on H3K4Me3.
Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for H3K4Me in control mouse UPS and Setd1a KO mouse UPS cells .
Overall design Ga I Ban
Contributor(s) Ou J, Alman B
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Submission date Jul 18, 2022
Last update date May 24, 2024
Contact name jianhong ou
Phone 5084102796
Organization name Duke University
Department Cell Biology
Lab Regeneromics
Street address 465 Nanaline Duke Building, Duke University Medical Center
City Durham
State/province North Carolina
ZIP/Postal code 27710
Country USA
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (10)
GSM6341914 Metastatic mouse UPS cell, H3K4Me3, rep1
GSM6341915 Metastatic mouse UPS cell, H3K4Me3, rep2
GSM6341916 Metastatic mouse UPS cell lacking Setd1a, H3K4Me3, rep1
This SubSeries is part of SuperSeries:
GSE208367 COMPASS complex inhibition targets the metastasis initiating cell in undifferentiated pleomorphic sarcoma
BioProject PRJNA859694

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE208365_RAW.tar 851.7 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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