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Series GSE208573 Query DataSets for GSE208573
Status Public on Jul 20, 2022
Title Molecular Epidemiology of Enterobacterales Resistant to Antibiotics of Last Resort in Pregnant Women in Labour at a Tertiary Hospital
Organisms Enterobacter cloacae; Klebsiella pneumoniae; Enterobacter roggenkampii
Experiment type Methylation profiling by high throughput sequencing
Other
Summary This study aims to determine the epidemiology of Enterobacteriaceae resistant to antibiotics of last resort in pregnant women in labour at a tertiary hospital, Pretoria, South Africa. Rectal swabs shall be used to screen for colonisation with CRE and colistin-resistant Enterobacteriales in pregnant women during labour. Carbapenem and colistin-resistant Enterobacterales can cause the following infections: bacteraemia; nosocomial pneumonia; urinary tract infections, and intra-abdominal infections. Due to limited treatment options, infections caused by these multidrug-resistant organisms are associated with a mortality rate of 40-50%. Screening for colonisation of carbapenem-resistant Enterobacteriaceae (CRE) and colistin-resistant Enterobacteriaceae will help implement infection and prevention measures to limit the spread of these multidrug-resistant organisms.
 
Overall design Genomic and epigenomic characterisation of carbapenem- and colistin-resistant Enterobacter spp. & K. pneumoniae
 
Contributor(s) Ntsoane VR, Mbelle NM, Sekyere JO
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BioProject PRJNA769740
Submission date Jul 19, 2022
Last update date Jul 23, 2022
Contact name John Osei Sekyere
E-mail(s) jod14139@gmail.com
Phone 0123192251
Organization name University of Pretoria
Department Department of Medical Microbiology
Lab Molecular Microbiology
Street address 05 Bopheloweg Off Dr. Savage Road
City Pretoria
State/province Gauteng
ZIP/Postal code 0084
Country South Africa
 
Platforms (3)
GPL27625 Sequel (Klebsiella pneumoniae)
GPL32492 Sequel (Enterobacter cloacae)
GPL32493 Sequel (Enterobacter roggenkampii)
Samples (5)
GSM6351522 ECl_1.VN
GSM6351523 ECl_2.VN
GSM6351524 ECl_3.VN

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE208573_RAW.tar 34.7 Mb (http)(custom) TAR (of GFF, XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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