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Series GSE208591 Query DataSets for GSE208591
Status Public on Jul 26, 2022
Title Using the Daphnia magna Transcriptome to Distinguish Water Source: Wetland and Stormwater Case Studies
Organism Daphnia magna
Experiment type Expression profiling by high throughput sequencing
Summary Investigation of mRNA expression (using HiSeq 2500) in response to treatment of Daphnia magna to pyriproxyfen, wetland water, or stormwater samples.
 
Overall design Four day treatment of D.magna to wetland waters with and without pyriproxyfen or stormwaters collected seasonally and with and without in situe water treatment controls. RNA was extracted from whole organism treated and control D.magna and mRNA was sequenced to assess gene expression in response to the experimental treatments.
 
Contributor(s) Jankowski M, Fairbairn D, Baller J, Westerhoff B, Schoenfuss H
Citation(s) 35622010
Submission date Jul 19, 2022
Last update date Aug 16, 2022
Contact name Mark Jankowski
E-mail(s) jankowski.mark@epa.gov
Phone 2065531476
Organization name USEPA
Street address 1200 6th Ave
City Seattle
State/province WA
ZIP/Postal code 98101
Country USA
 
Platforms (1)
GPL23821 Illumina HiSeq 2500 (Daphnia magna)
Samples (230)
GSM6354974 D.magna whole body, BMP-37ST-Inflow-0 ng/L pyriproxyfen-Late Summer-Rep1 F1Z_S127
GSM6354975 D.magna whole body, BMP-37ST-Inflow-0 ng/L pyriproxyfen-Spring-Rep1 F2X_S26
GSM6354976 D.magna whole body, BMP-37ST-Inflow-0 ng/L pyriproxyfen-Late Summer-Rep2 F2Z_S128
Relations
BioProject PRJNA860189

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE208591_kallisto.counts.txt.gz 11.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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