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Series GSE20908 Query DataSets for GSE20908
Status Public on Jan 01, 2011
Title Gene expression of lipid metabolism-related genes correlated with milk fatty acids in dairy cows
Organism Bos taurus
Experiment type Expression profiling by array
Summary The aim of the present study was to correlate lipid metabolism genes in the mammary gland tissue affected by stage of lactation and nutrition to the resulting milk fatty acids composition in grazing dairy cows, and to classify milk fatty acid (FA) groups based on variations in lipid metabolism gene expression patterns.
Identifying the relationship between lipid metabolism genes in the mammary gland tissue and the resulting milk fatty acid composition is expected to greatly contribute to our understanding of milk fatty acid metabolism and to enhance opportunities to improve milk fat composition through nutrition. In fact, SNCA, SCD5, and PNPLA2 lipid metabolism-related genes affected by unsaturated fatty acids supplementation, were found to strongly correlated to different milk FA groups, but also contributed most to the classification of these FA groups, suggesting a significant role in mediating the lipid metabolism in the mammary gland tissue and determining the milk fatty acids composition.
 
Overall design A total of 28 Holstein-Friesian dairy cows in mid-lactation were blocked according to parity (2.4 ± 0.63 years), days in milk (DIM; 153 ± 32.8 days), milk yield (25.7 ± 3.08 kg/d) and fat content (4.3 ± 0.12%). Cows were then randomly assigned to four UFA-sources based on rapeseed, soybean, linseed or a mixture of the three oils for 23 days (Period I) after which, all 28 cows were switched to a control diet for an additional 28 days (Period II). On the last day of both periods, mammary gland biopsies were taken to study genome-wide differences in lipid metabolism gene expression.
 
Contributor(s) Mach N, van Baal J, Kruijt L, Smits M
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Submission date Mar 16, 2010
Last update date Mar 22, 2012
Contact name Nuria Mach
E-mail(s) nuria.mach@inra.jouy.fr
Organization name INRA
Department Animal Genetics and Integrative Biology (GABI)
Lab Laboratory of Animal Genetics
Street address Rue de Vilvert
City Jouy-en-Josas
State/province Ile de France
ZIP/Postal code 78350
Country France
 
Platforms (1)
GPL10186 [Bovine] Affymetrix Bovine Genome Array [CDF: Brainarray Version 11.0.1, Bovine_Bt_REFSEQ]
Samples (56)
GSM523059 Cow 1_Period I
GSM523060 Cow 2_Period I
GSM523061 Cow 3_Period I
Relations
BioProject PRJNA124411

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE20908_RAW.tar 107.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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