|
| Status |
Public on Nov 03, 2022 |
| Title |
Gene expression profile at single cell level of Medicago truncatula roots in response to rhizobia infection |
| Organism |
Medicago truncatula |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The nuclei of Medicago truncatula root seedlings exposed to rhizobia were isolated at single-cell resolution with single-nuclei RNA-seq applying 10x Genomics technology.
|
| |
|
| Overall design |
The nuclei of the 6 days-old roots of Medicago truncatula seedlings inoculated for 48h with water (mock) or Ensifer meliloti were isolated for sNucRNA-seq libraries construction. The pre-processing and processing of the datasets were performed with Cell Ranger and Seurat.
|
| |
|
| Contributor(s) |
Cervantes-Perez SA, Thibivilliers S, Lafont C, Farmer AD, Frugier F, Libalult M |
| Citation(s) |
36321199 |
| |
| Submission date |
Aug 09, 2022 |
| Last update date |
Feb 02, 2023 |
| Contact name |
Sergio Alan Cervantes-Perez |
| E-mail(s) |
alancervantes@arizona.edu
|
| Organization name |
University of Arizona
|
| Department |
School of Plant Sciences
|
| Lab |
Bucksch
|
| Street address |
1140 E South Campus Dr
|
| City |
Tucson |
| State/province |
Arizona |
| ZIP/Postal code |
85721 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL30272 |
Illumina NovaSeq 6000 (Medicago truncatula) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA868047 |
Less...
More...