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Series GSE212511 Query DataSets for GSE212511
Status Public on Sep 04, 2022
Title Quantitative Analysis of mid-L4 WT worms after P. aeruginosa PA01 infection for 12 hours
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary To identify candidate genes whose expressions were regulated by P. aeruginosa PA01, we used RNA-Seq analysis to study the transcriptomic profiles of mid-L4 worms exposed to P. aeruginosa PA01 for 12 hours. Differential expression analysis was performed by comparing WT worms exposed to P. aeruginosa PA01 for 12 hours versus worms fed E. coli OP50.
 
Overall design The transcriptional profiles of mid-L4 WT worms exposed to P. aeruginosa PA01 or E. coli OP50 for 12 hours were generated by deep sequence, in quadruplicate, using Illumina Novaseqâ„¢.
 
Contributor(s) Ma Y, Zhang J, Yang W, Zou C
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Submission date Sep 01, 2022
Last update date Sep 06, 2022
Contact name Yi-Cheng Ma
E-mail(s) 290361200@qq.com, mayc@ynu.edu.cn
Phone 86-15288245480
Organization name Yunnan University
Lab State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan
Street address NO.2 North Cuihu Road
City kunming
State/province yunnan
ZIP/Postal code 650091
Country China
 
Platforms (1)
GPL26672 Illumina NovaSeq 6000 (Caenorhabditis elegans)
Samples (8)
GSM6533831 OP50-rep1
GSM6533832 OP50-rep2
GSM6533833 OP50-rep3
Relations
BioProject PRJNA875663

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212511_RAW.tar 21.7 Mb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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