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Series GSE212530 Query DataSets for GSE212530
Status Public on Dec 01, 2023
Title Nuclear Pyruvate Dehydrogenase Complex regulates EIN2-directed Histone Acetylation and Transcriptional Regulation in the Ethylene Response. [RNA-Seq]
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Next-generation sequencing (NGS) has been used to study the differential gene expression in Arabidopsis etiolated seedlings under air and ethylene treatment. The goal of this study is to investigate how pyruvate dehydrogenase complex is involved in transcriptional regulation in response to ethylene.
 
Overall design Three-day-old etiolated Arabidopsis seedling mRNA profiles of pdc mutants were generated by sequencing, in 2 replications, using Illumina HiSeq 2000
 
Contributor(s) Shao Z, Qiao H
Citation(s) 37961310
Submission date Sep 01, 2022
Last update date Dec 02, 2023
Contact name Zhengyao Shao
E-mail(s) zyshao11@utexas.edu
Organization name University of Texas at Austin
Department MBS
Lab Hong Qiao
Street address 2506 Speedway, NMS 5.324
City Austin
State/province TX
ZIP/Postal code 78712
Country USA
 
Platforms (1)
GPL13222 Illumina HiSeq 2000 (Arabidopsis thaliana)
Samples (8)
GSM6534029 e122e22_air_rep1
GSM6534030 e122e22_air_rep2
GSM6534031 e122e22_ethylene_rep1
This SubSeries is part of SuperSeries:
GSE212540 Nuclear Pyruvate Dehydrogenase Complex regulates EIN2-directed Histone Acetylation and Transcriptional Regulation in the Ethylene Response.
Relations
BioProject PRJNA875920

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212530_RAW.tar 342.5 Mb (http)(custom) TAR (of BW)
GSE212530_diff_e1e2_air_vs_et_results.csv.gz 1.2 Mb (ftp)(http) CSV
GSE212530_diff_e2e3_air_vs_et_results.csv.gz 1.2 Mb (ftp)(http) CSV
GSE212530_fc_2_wt_e1e2_e2e3_air_vs_c2h4.csv.gz 35.8 Kb (ftp)(http) CSV
GSE212530_featureCounts_results_e1e2_air_vs_et_pe.txt.gz 1.9 Mb (ftp)(http) TXT
GSE212530_featureCounts_results_e2e3_air_vs_et_pe.txt.gz 1.9 Mb (ftp)(http) TXT
GSE212530_readme.txt 830 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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