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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Apr 22, 2024 |
| Title |
Differential expression analysis of mutated genes at different loci of H2B |
| Organism |
Schizosaccharomyces pombe |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To investigate the differential analysis of gene expression of mutations at different sites of H2B, we constructed six strains with point mutations at different positions of H2B, and then, we performed the gene expression analysis from the RNA-Seq data.
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| Overall design |
Gene expression analysis of the six mutant strains (H2BG52D, H2BP102L, H2BE112K, H2BE75Q, H2BE34K, and H2BD67N) was compared with the wild-type.
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| Contributor(s) |
Feng G |
| Citation(s) |
38718864 |
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| Submission date |
Sep 02, 2022 |
| Last update date |
Jun 28, 2024 |
| Contact name |
冯 刚 |
| E-mail(s) |
fengg@njnu.edu.cn
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| Organization name |
南京师范大学
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| Street address |
江苏省南京市仙林街道南京师范大学
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| City |
南京 |
| ZIP/Postal code |
210000 |
| Country |
China |
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| Platforms (1) |
| GPL17225 |
Illumina HiSeq 2500 (Schizosaccharomyces pombe) |
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| Samples (24)
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| GSM6541951 |
S. pombe, H2BD67N, rep1 |
| GSM6541952 |
S. pombe, H2BD67N, rep2 |
| GSM6541953 |
S. pombe, H2BD67N, rep3 |
| GSM6541954 |
S. pombe, H2BE34K, rep1 |
| GSM6541955 |
S. pombe, H2BE34K, rep2 |
| GSM6541956 |
S. pombe, H2BE34K, rep3 |
| GSM6541957 |
S. pombe, H2BE75Q, rep1 |
| GSM6541958 |
S. pombe, H2BE75Q, rep2 |
| GSM6541959 |
S. pombe, H2BE75Q, rep3 |
| GSM6541960 |
S. pombe, H2BE112K, rep1 |
| GSM6541961 |
S. pombe, H2BE112K, rep2 |
| GSM6541962 |
S. pombe, H2BE112K, rep3 |
| GSM6541963 |
S. pombe, H2BG52D, rep1 |
| GSM6541964 |
S. pombe, H2BG52D, rep2 |
| GSM6541965 |
S. pombe, H2BG52D, rep3 |
| GSM6541966 |
S. pombe, H2BP102L, rep1 |
| GSM6541967 |
S. pombe, H2BP102L, rep2 |
| GSM6541968 |
S. pombe, H2BP102L, rep3 |
| GSM6541969 |
S. pombe, Set1_del, rep1 |
| GSM6541970 |
S. pombe, Set1_del, rep2 |
| GSM6541971 |
S. pombe, Set1_del, rep3 |
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| Relations |
| BioProject |
PRJNA876287 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE212629_WT-vs-H2BD67N.all.annot.txt.gz |
890.9 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BD67N.filter.annot.txt.gz |
150.3 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BE112K.all.annot.txt.gz |
889.6 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BE112K.filter.annot.txt.gz |
104.0 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BE34K.all.annot.txt.gz |
878.4 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BE34K.filter.annot.txt.gz |
21.5 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BE75Q.all.annot.txt.gz |
892.3 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BE75Q.filter.annot.txt.gz |
162.1 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BG52D.all.annot.txt.gz |
895.7 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BG52D.filter.annot.txt.gz |
184.7 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BP102L.all.annot.txt.gz |
892.4 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-H2BP102L.filter.annot.txt.gz |
144.3 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-set1_del.all.annot.txt.gz |
887.0 Kb |
(ftp)(http) |
TXT |
| GSE212629_WT-vs-set1_del.filter.annot.txt.gz |
62.0 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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