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| Status |
Public on Feb 27, 2024 |
| Title |
Dynamic landscape of enhancer-derived RNA during mouse early embryo development |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Enhancer RNAs (eRNAs) play critical roles in diverse biological processes by mediating the activation of their target genes. However, the systematic landscape and potential regulations and functions of eRNAs during mammalian early embryo development remains elusive. Here, we present the comprehensive detection and characterization of eRNAs during mouse early embryo development. We demonstrated the spatiotemporal and allelic landscape of eRNA expression. We found the asymmetric activation of paternal-specific eRNAs during zygotic genome activation (ZGA). We identified TFs and their cooperation in regulating dynamic eRNA expression. eRNA are involved in multiple developmental signaling pathways through putatively regulating their target genes. Interestingly, we observed that the transcriptions of enhancers themselves are also widely modulated by eRNAs during mouse early embryo development. Critically, we de novo identified a novel eRNA transcribed from a super-enhancer region exclusively expressed at 2-cell stage of mouse early embryos and experimentally validated its key functional role in regulating ZGA and early embryo development.
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| Overall design |
Examination of gene expression in control and SPENH0335 knocked-down mouse embryos of 2-cell stage.
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| Contributor(s) |
Yu H, Zhao J |
| Citation missing |
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| |
| Submission date |
Sep 12, 2022 |
| Last update date |
Feb 27, 2024 |
| Contact name |
Hua Yu |
| E-mail(s) |
yuhua@westlake.edu.cn
|
| Phone |
18758008246
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| Organization name |
Westlake University
|
| Street address |
No.18 Shilongshan Road
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| City |
Hangzhou |
| ZIP/Postal code |
310024 |
| Country |
China |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (4)
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| Relations |
| BioProject |
PRJNA879742 |
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