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Series GSE213450 Query DataSets for GSE213450
Status Public on May 17, 2023
Title Localization and pathogenic role of the cysteine protease dentipain in Treponema denticola
Platform organism Treponema denticola
Sample organisms Treponema denticola; Treponema denticola ATCC 35405
Experiment type Expression profiling by array
Summary Treponema denticola is a major etiological agent of chronic periodontis. Dentipain is one of the virulence factors of this microorganism. The localization and function of the protein has yet to be clarified although it has shown to be involved in the virulence of T. denticola. Therefore, this study aimed to characterize the role of dentipain in T. denticola. To investigate the function of dentipain, dentipain deficient mutant was constructed using an ermFermAM cassette and gene expression profile of the mutant was evaluated by microarray analysis. Growth rate of the dentipain-deficient mutants was smaller than that of the wild-type strain. In the mutant. Thirty-five genes in differentially expressed genes by the microarray analysis annotated as membrane or plasma membrane in gene ontology. Hydrophobicity of the mutant were higher than that of the wild-type strain. These findings suggest that dentipain involved in the surface characteristics and growth of T. denticola.
 
Overall design Comparison of 2 strains of T. denticola. Treponema denticola ATCC 35405 and YM-3 were cultured in TYGVS medium for 24-48 h. Profile of gene expression of T. denticola YM-3 was compared to that of ATCC 35405.
 
Contributor(s) Miyai-Muraia Y, Okamoto-Shibayama K, Sato T, Kikuchi Y, Kokubu E, Potempa J, Ishihara K
Citation(s) 36641800
Submission date Sep 15, 2022
Last update date May 19, 2023
Contact name Kazuyuki Ishihara
E-mail(s) ishihara@tdc.ac.jp
Phone 81-3-6380-9558
Organization name Tokyo Dental College
Department Microbiology
Street address 2-1-14 Kanda-Misakicho, Chiyoda-ku
City Tokyo
ZIP/Postal code 101-0061
Country Japan
 
Platforms (1)
GPL29234 Agilent-084221 T. denticola 8x15K array [ProbeName version]
Samples (4)
GSM6586269 405-3
GSM6586270 405-4
GSM6586271 YM-3-3
Relations
BioProject PRJNA880864

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213450_RAW.tar 9.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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