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Series GSE213782 Query DataSets for GSE213782
Status Public on Oct 19, 2023
Title Low input lipidomics analysis reveals remodeling of lipid metabolism and saturation during mouse and human preimplantation embryo development
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Scd1 is responsible for forming a carbon-carbon double bound at the 9-10th position from the C-terminus of saturated fatty acids such as palmitic acid and stearic acid (C16:0 and C18:0), to generate the products of palmitoleic acid (C16:1) and oleic acid (C18:1).Here, we found SCD1 is required for in vitro blastocyst embryo development, and one of the mechanisms is through regulating unsaturated fatty acid-mediated membrane fluidity and formation of apical domain. Overall, our study provides invaluable resources for lipid reprogramming in mammalian preimplantation embryo development and mechanistic insights on regulation of embryogenesis by lipid unsaturation.
 
Overall design Examination of gene expression in wide-type and scd1 knocking down embryo
 
Contributor(s) Zhang L, Zhao J, Zhang J, Yu H
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Submission date Sep 20, 2022
Last update date Oct 19, 2023
Contact name Hua Yu
E-mail(s) yuhua@westlake.edu.cn
Phone 18758008246
Organization name Westlake University
Street address No.18 Shilongshan Road
City Hangzhou
ZIP/Postal code 310024
Country China
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (9)
GSM6594236 WT embryo rep1
GSM6594237 WT embryo rep2
GSM6594238 CAY_rep1
Relations
BioProject PRJNA882438

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213782_DMSO_CAY_counts.xlsx 6.5 Mb (ftp)(http) XLSX
GSE213782_NC_siSCD1_counts.xlsx 6.9 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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