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Series GSE213880 Query DataSets for GSE213880
Status Public on Mar 07, 2024
Title A MTA2-SATB2 chromatin complex restrains colonic plasticity toward small intestine by retaining HNF4A at colonic chromatin
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 38678016
Submission date Sep 21, 2022
Last update date Jun 06, 2024
Contact name Wei Gu
E-mail(s) wei.gu@beigene.com
Phone 13776921246
Organization name Beigene
Department Beigene Institute
Lab Gu Lab
Street address 51 Rijing Road
City Shanghai
State/province Shanghai
ZIP/Postal code 200135
Country China
 
Platforms (2)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (40)
GSM6595710 MTA2_ChIP in wild type colonic epithelium rep 1
GSM6595711 MTA2_ChIP in wild type colonic epithelium rep 2
GSM6595712 MTA2_ChIP in Satb2KO colonic epithelium rep 1
This SuperSeries is composed of the following SubSeries:
GSE213877 ChIP-seq of colonic intestine epithelium from Vil-CreER;MTA2F/F (MTA2KO), Vil-CreER;SATB2F/F(SATB2KO) and Wild Type mice
GSE213878 Bulk RNA-seq of mouse colonic organoids: CRISPR functional Screening of Satb2-interact proteins (NuRD and SWI/SNF complex)
GSE213879 Bulk RNA-seq (>20M reads) of colonic epithelium from Vil-CreER;MTA2F/F (MTA2KO) and Wild Type mice
Relations
BioProject PRJNA882834

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213880_RAW.tar 7.6 Gb (http)(custom) TAR (of BED, BW)
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