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Series GSE213960 Query DataSets for GSE213960
Status Public on Dec 04, 2023
Title Bivalent histone modification of BCG1 enables fungal pathogen to evade host immunity (RNA-Seq)
Organisms Triticum aestivum; Fusarium graminearum PH-1
Experiment type Expression profiling by high throughput sequencing
Summary Bivalent chromatin modification containing opposing H3K4me3 and H3K27me3 marks controls various biological processes by fine-tuning gene expression in animals and plants, however how this bivalent modification regulates pathogenicity of fungal pathogen remains exclusive. Here, we provided a genome-wide landscape of H3K4me3 and H3K27me3 of wheat head blight fungus Fusarium graminearum (Fg), leading to the identification of infection-induced bivalent chromatin-marked genes (BCGs). Among those, BCG1, which encodes a novel xylanase with a G/Q rich motif, is required for the full virulence of Fg pathogenicity through degradation of host cell wall. However, the G/Q rich motif is recognized by pattern-recognition receptors and triggers plant innate immunity. Further data illustrates that Fg employs H3K4me3 modification to induce BCG1 expression rapidly during the early infection, and then switches to bivalent H3K4me3-H3K27me3 chromatin state that renders rapid epigenetic silencing of BCG1 for escaping from host immune monitor, therefore leading to the successful invasion. Collectively, our study highlights the molecular mechanism of how fungal pathogen employs bivalent epigenetic modification to facilitate the successful infection by escaping of host immunity, which provides conceptual insights into plant-microbe interaction.
 
Overall design Comparative gene expression of RNA-seq data for Wild type PH-1at different hour post-infection .
 
Contributor(s) Gu Q, Zhao X
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Sep 22, 2022
Last update date Dec 04, 2023
Contact name zhao xiao zhen
E-mail(s) zhaoxiaozhen@ahau.edu.cn
Phone 17768116791
Organization name Anhui Agricultural University
Street address Anhui Agricultural University, 130 Changjiangxilu, Shushan District, Hefei, Anhui Province, China
City Hefei
ZIP/Postal code 230036
Country China
 
Platforms (2)
GPL23509 Illumina HiSeq 4000 (Triticum aestivum)
GPL32260 Illumina HiSeq 4000 (Fusarium graminearum PH-1)
Samples (15)
GSM6596986 RNA-Seq of Fusarium graminearum PH-1:PH-1 at 0hpi rep1
GSM6596987 RNA-Seq of Fusarium graminearum PH-1:PH-1 at 0hpi rep2
GSM6596988 RNA-Seq of Fusarium graminearum PH-1:PH-1 at 0hpi rep3
This SubSeries is part of SuperSeries:
GSE213962 Temporally-coordinated bivalent histone modifications of BCG1 enable fungal invasion and immune evasion
Relations
BioProject PRJNA883377

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE213960_PH-1.0vs24vs48hpi.all.genes.TPM.xlsx 1.5 Mb (ftp)(http) XLSX
GSE213960_Wheat.BCG1vsHis_control.DEGs.xlsx 3.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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