NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE214845 Query DataSets for GSE214845
Status Public on Apr 12, 2023
Title Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37021585
Submission date Oct 05, 2022
Last update date Jul 12, 2023
Contact name Bernard Klaas van der Veer
E-mail(s) ben.vanderveer@kuleuven.be
Organization name KU Leuven
Department Department of Development and Regeneration
Lab Laboratory for Stem Cell and Developmental Epigenetics
Street address Herestraat 49 - box 804
City Leuven
State/province Vlaams-Brabant
ZIP/Postal code 3000
Country Belgium
 
Platforms (4)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (150)
GSM6616375 KO1 - day 0 (mESC)
GSM6616376 KO1 - day 3
GSM6616377 KO1 - day 5
This SuperSeries is composed of the following SubSeries:
GSE214828 Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation [RNAseq]
GSE214829 Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation [ATACseq]
GSE214830 Dual gene activating and repressive functions of TET1 in germ layer lineage bifurcation distinguished by genomic context and dependence on 5-methylcytosine oxidation [oxWGBS]
Relations
BioProject PRJNA887376

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE214845_RAW.tar 15.8 Gb (http)(custom) TAR (of BIGWIG, BW, MTX, NARROWPEAK, RDS, TSV, TXT)
SRA Run SelectorHelp

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap
External link. Please review our privacy policy.