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| Status |
Public on Oct 14, 2022 |
| Title |
Infection characteristics and transcriptomics of African swine fever virus in Bama mini-pigs |
| Organism |
Sus scrofa domesticus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
To analyse the host responses of Bama mini-pigs to ASFV infection, we chose the spleen and inguinal lymph nodes from Bama mini-pigs infected with ASFV at a dose of 103 HAD50 and the mock group for transcriptomic analysis.
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data for spleen and inguinal lymph nodes from Bama mini-pigs infected with ASFV at a dose of 103 HAD50 and the mock group
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| Contributor(s) |
Lv C, Yang J, Zou Z, Jin M |
| Citation(s) |
36445132 |
| BioProject |
PRJNA882360 |
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| Submission date |
Oct 11, 2022 |
| Last update date |
Jan 11, 2023 |
| Contact name |
Changjie Lv |
| E-mail(s) |
lvcj@webmail.hzau.edu.cn
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| Phone |
13667287676
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| Organization name |
huazhong agriculture university
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| Street address |
shizishan street
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| City |
wuhan |
| State/province |
hubei |
| ZIP/Postal code |
430070 |
| Country |
China |
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| Platforms (1) |
| GPL29562 |
Illumina NovaSeq 6000 (Sus scrofa domesticus) |
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| Samples (12)
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| GSM6625659 |
spleen, ASFV-infected, Day 41, rep1 |
| GSM6625660 |
spleen, ASFV-infected, Day 41, rep2 |
| GSM6625661 |
spleen, ASFV-infected, Day 41, rep3 |
| GSM6625662 |
inguinal lymph nodes, control, Day 41, rep1 |
| GSM6625663 |
inguinal lymph nodes, control, Day 41, rep2 |
| GSM6625664 |
inguinal lymph nodes, control, Day 41, rep3 |
| GSM6625665 |
inguinal lymph nodes, ASFV-infected, Day 41, rep1 |
| GSM6625666 |
inguinal lymph nodes, ASFV-infected, Day 41, rep2 |
| GSM6625667 |
inguinal lymph nodes, ASFV-infected, Day 41, rep3 |
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE215197_RAW.tar |
59.5 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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