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Series GSE21562 Query DataSets for GSE21562
Status Public on Apr 01, 2011
Title Systems genetics approach to low dose radiation sensitivity in BXD recombinant inbred mice
Organism Mus musculus
Experiment type Expression profiling by array
Summary The immune system illustrates the challenges of assigning risk to low dose radiation (LDR) exposure in a population. While high radiation doses clearly suppress immune function, a number of studies have shown that LDR affects immune cell subpopulations in ways that could be beneficial. In the intact organism, defining the consequences of LDR is further complicated by the impact of genetic background, particularly in systems such as the immune system for which both radiosensitivity and genetic effects are profound. We employed a systems genetics approach to test for heritable differences in LDR responses. Mice from 39 BXD recombinant inbred (RI) strains were exposed to 10cGy gamma radiation to determine effects on immune function and oxidative stress 48h after irradiation. LDR significantly enhanced neutrophil phagocytosis in a manner that was independent of genetic background. In contrast, genetic background significantly impacted LDR-induced changes in spleen superoxide dismutase activity. Transcriptome data from spleens of the BXD parental strains highlighted the impact of genetic background on LDR responses and also indicate that genetic variation in radiosensitivity is further unmasked at low radiation doses. Taken together, these data highlight the need to consider genetic variation when assessing LDR outcomes.
 
Overall design Adult C57BL/6J and DBA/2J mice (10 weeks old) were exposed to low dose (10cGy) or high dose (1Gy) gamma radiation. Mice were sacrificed 24h after radiation or sham exposure & spleens were harvested for transcriptomic analysis.
 
Contributor(s) Lynch RM, Voy BH
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Submission date Apr 28, 2010
Last update date Jan 18, 2013
Contact name Rachel Lynch
E-mail(s) rlynch@utk.edu
Organization name University of Tennessee
Department Life Sciences
Lab Brynn Voy
Street address 2640 Morgan Circle Drive, 51f McCord Hall
City Knoxville
State/province TN
ZIP/Postal code 37996
Country USA
 
Platforms (1)
GPL6105 Illumina mouse-6 v1.1 expression beadchip
Samples (23)
GSM538676 B6_1401_C
GSM538677 B6_1403_C
GSM538678 B6_1408_C
Relations
BioProject PRJNA126185

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE21562_RAW.tar 5.2 Mb (http)(custom) TAR
GSE21562_non-normalized.txt.gz 5.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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