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Series GSE216714 Query DataSets for GSE216714
Status Public on Aug 29, 2023
Title Immunomodulatory effects of hydrolyzed Debaryomyces hansenii in Atlantic salmon (Salmo salar L): From the in vitro model to a natural pathogen challenge after seawater transfer
Organism Salmo salar
Experiment type Expression profiling by high throughput sequencing
Summary Non-Saccharomyces yeast such as Debaryomyces hansenii or its cell wall-components are emerging candidates for novel functional aquafeeds, as they contain several microbe-associated molecular patterns (MAMPs) that can activate and modulate the host’s physiological responses and improve fish health and welfare. RNAseq results showed an upregulation in pathways associated with humoral immunity and complement activation in the liver. Considering these data, LAN6 could be a promising functional candidate for aquafeeds to achieve a more resilient salmon during fish farming.
 
Overall design Comparative gene expression profiling analysis of RNA-seq data for head kidney, liver and distal intestine from Atlantic salmon fed 0.1% hydrolyzed Debaryomyces hansenii.
 
Contributor(s) Morales-Lange B, Øverland M
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Submission date Oct 27, 2022
Last update date Aug 30, 2023
Contact name Byron Morales Lange
E-mail(s) byron.maximiliano.morales.lange@nmbu.no
Organization name Norwegian University of Life Sciences
Street address Arboretveien 6
City Ås
ZIP/Postal code 1430
Country Norway
 
Platforms (1)
GPL24981 Illumina NovaSeq 6000 (Salmo salar)
Samples (48)
GSM6689323 A_CD_241-F37-HK-SW-1_S203_L003
GSM6689324 A_CD_242-F37-HK-SW-2_S227_L003
GSM6689325 A_CD_247-F37-HK-SW-19_S266_L003
Relations
BioProject PRJNA895039

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216714_RAW.tar 320.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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