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GEO accession:
Series GSE216862
Query DataSets for GSE216862
Status
Public on Jun 18, 2024
Title
A HDAC4-HDAC2 complex composes an epigenetic sensor that links the DNA damage response to the senescent program by erasing H2BK120 acetylation
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
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Submission date
Oct 29, 2022
Last update date
Jun 18, 2024
Contact name
Emiliano Dalla
E-mail(s)
emiliano.dalla@uniud.it
Phone
+390432494286
Organization name
Università degli Studi di Udine
Department
Department of Medicine
Street address
Piazzale Kolbe 4
City
Udine
State/province
UD
ZIP/Postal code
33100
Country
Italy
Platforms (2)
GPL21697
NextSeq 550 (Homo sapiens)
GPL28038
DNBSEQ-G400 (Homo sapiens)
Samples (51)
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More...
GSM6685643
Input BJ-hTERT day2 RepA
GSM6685644
Input BJ-hTERT/HRAS day2 RepA
GSM6685645
Input BJ-hTERT/HRAS/HDAC4 day2 RepA
GSM6685646
Input BJ-hTERT day8 RepA
GSM6685647
Input BJ-hTERT/HRAS day8 RepA
GSM6685648
Input BJ-hTERT/HRAS/HDAC4 day8 RepA
GSM6685649
H2BK120ac BJ-hTERT day2 RepA
GSM6685650
H2BK120ac BJ-hTERT/HRAS day2 RepA
GSM6685651
H2BK120ac BJ-hTERT/HRAS/HDAC4 day2 RepA
GSM6685652
HDAC4 BJ-hTERT day2 RepA
GSM6685653
HDAC4 BJ-hTERT/HRAS day2 RepA
GSM6685654
HDAC4 BJ-hTERT/HRAS/HDAC4 day2 RepA
GSM6685655
gammaH2AX BJ-hTERT day8 RepA
GSM6685656
gammaH2AX BJ-hTERT/HRAS day8 RepA
GSM6685657
gammaH2AX BJ-hTERT/HRAS/HDAC4 day8 RepA
GSM6685658
H2BK120ac BJ-hTERT day8 RepA
GSM6685659
H2BK120ac BJ-hTERT/HRAS day8 RepA
GSM6685660
H2BK120ac BJ-hTERT/HRAS/HDAC4 day8 RepA
GSM6685661
H4K16ac BJ-hTERT day8 RepA
GSM6685662
H4K16ac BJ-hTERT/HRAS day8 RepA
GSM6685663
H4K16ac BJ-hTERT/HRAS/HDAC4 day8 RepA
GSM6685664
Input BJ-hTERT day2 RepB
GSM6685665
Input BJ-hTERT/HRAS day2 RepB
GSM6685666
Input BJ-hTERT/HRAS/HDAC4 day2 RepB
GSM6685667
Input BJ-hTERT day8 RepB
GSM6685668
Input BJ-hTERT/HRAS day8 RepB
GSM6685669
Input BJ-hTERT/HRAS/HDAC4 day8 RepB
GSM6685670
H2BK120ac BJ-hTERT day2 RepB
GSM6685671
H2BK120ac BJ-hTERT/HRAS day2 RepB
GSM6685672
H2BK120ac BJ-hTERT/HRAS/HDAC4 day2 RepB
GSM6685673
HDAC4 BJ-hTERT day2 RepB
GSM6685674
HDAC4 BJ-hTERT/HRAS day2 RepB
GSM6685675
HDAC4 BJ-hTERT/HRAS/HDAC4 day2 RepB
GSM6685676
gammaH2AX BJ-hTERT day8 RepB
GSM6685677
gammaH2AX BJ-hTERT/HRAS day8 RepB
GSM6685678
gammaH2AX BJ-hTERT/HRAS/HDAC4 day8 RepB
GSM6685679
H2BK120ac BJ-hTERT day8 RepB
GSM6685680
H2BK120ac BJ-hTERT/HRAS day8 RepB
GSM6685681
H2BK120ac BJ-hTERT/HRAS/HDAC4 day8 RepB
GSM6685682
H4K16ac BJ-hTERT day8 RepB
GSM6685683
H4K16ac BJ-hTERT/HRAS day8 RepB
GSM6685684
H4K16ac BJ-hTERT/HRAS/HDAC4 day8 RepB
GSM6696848
Input SK-LMS-1 HDAC4-/- HDAC4-ER 0h from 4-OHT (HDAC4) removal
GSM6696849
Input SK-LMS-1 HDAC4-/- HDAC4-ER 12h from 4-OHT (HDAC4) removal
GSM6696850
Input SK-LMS-1 HDAC4-/- HDAC4-ER 36h from 4-OHT (HDAC4) removal
GSM6696851
H3K27ac in SK-LMS-1 HDAC4-/- HDAC4-ER 0h from 4-OHT (HDAC4) removal
GSM6696852
H3K27ac in SK-LMS-1 HDAC4-/- HDAC4-ER 12h from 4-OHT (HDAC4) removal
GSM6696853
H3K27ac in SK-LMS-1 HDAC4-/- HDAC4-ER 36h from 4-OHT (HDAC4) removal
GSM6696854
H3K4me1 in SK-LMS-1 HDAC4-/- HDAC4-ER 0h from 4-OHT (HDAC4) removal
GSM6696855
H3K4me1 in SK-LMS-1 HDAC4-/- HDAC4-ER 12h from 4-OHT (HDAC4) removal
GSM6696856
H3K4me1 in SK-LMS-1 HDAC4-/- HDAC4-ER 36h from 4-OHT (HDAC4) removal
This SuperSeries is composed of the following SubSeries:
GSE216677
A HDAC4-HDAC2 complex composes an epigenetic sensor that links the DNA damage response to the senescent program by erasing H2BK120 acetylation [I]
GSE216861
A HDAC4-HDAC2 complex composes an epigenetic sensor that links the DNA damage response to the senescent program by erasing H2BK120 acetylation [II]
Relations
BioProject
PRJNA895718
Download family
Format
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SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE216862_RAW.tar
5.9 Gb
(http)
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TAR (of BW)
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