 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on May 16, 2011 |
| Title |
MozAtlas: A comprehensive gene expression atlas of sex- and tissue-specificity in the malaria vector, Anopheles gambiae. |
| Platform organisms |
Plasmodium falciparum; Anopheles gambiae |
| Sample organism |
Anopheles gambiae |
| Experiment type |
Expression profiling by array
|
| Summary |
Background.
The mosquito, Anopheles gambiae, is the primary vector of human malaria, a disease responsible for millions of deaths each year. To improve strategies for controlling transmission of the causative parasite, Plasmodium falciparum, we require a thorough understanding of the developmental mechanisms, physiological processes and evolutionary pressures affecting life-history traits in the mosquito. Identifying genes expressed in particular tissues or involved in specific biological processes is an essential part of this process.
Results.
In this study, we present transcription profiles for ~82% of annotated Anopheles genes in dissected adult male and female tissues. The sensitivity afforded by examining dissected tissues found gene activity in an additional 20% of the genome that is undetected when using whole-animal samples. The somatic and reproductive tissues we examined each displayed patterns of sexually dimorphic and tissue-specific expression. By comparing expression profiles with Drosophila melanogaster we also assessed which genes are well conserved within the Diptera versus those that are more recently evolved.
Conclusions.
Our expression atlas and associated publicly available database, the MozAtlas (www.tissue-atlas.org), provides information on the relative strength and specificity of gene expression in several somatic and reproductive tissues, isolated from a single strain grown under uniform conditions. The data will serve as a reference for other mosquito researchers by providing a simple method for identifying where genes are expressed in the adult, however, in addition our resource will also provide insights into the evolutionary diversity associated with gene expression levels among species.
|
| |
|
| Overall design |
MozAtlas is composed of data covering 15 distinct adult tissues with 4 replicates using Affymetrix chips. To provide other researchers with the ability to compare their own experiments with our analyses, we have constructed a database and web-browser for querying tissue expression in Anopheles. This framework will in the future be expanded to include additional tissues and developmental stages, as well as additional species when available.
|
| |
|
| Contributor(s) |
Baker DA, Nolan T, Fisher B, Pinder A, Crisanti A, Russell S |
| Citation(s) |
21649883 |
| |
| Submission date |
May 05, 2010 |
| Last update date |
Aug 08, 2013 |
| Contact name |
Dean Baker |
| Organization name |
University of Cambridge
|
| Street address |
Department of Genetics, Downing Street
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 3EH |
| Country |
United Kingdom |
| |
|
| Platforms (1) |
| GPL1321 |
[Plasmodium_Anopheles] Affymetrix Plasmodium/Anopheles Genome Array |
|
| Samples (60)
|
|
| Relations |
| BioProject |
PRJNA125855 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE21689_RAW.tar |
101.1 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
|
|
|
|
 |
Less...
More...