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Status |
Public on Aug 29, 2024 |
Title |
Gene expression profiling analysis of RNA-seq data derived from mice' visual cortex total RNA. |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Gene expression profiling analysis of RNA-seq data derived from mice' visual cortex total RNA. Tissues were harvested at specific time points over the day either over a normal 12/12 light/dark cycle, or in a control condition where the mice were also housed in 12/12 conditions but the light did not turn on for the last day, the day of tissue collection.
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Overall design |
Gene expression profiling analysis of RNA-seq data derived from mice' visual cortex total RNA. Tissues were harvested at specific time points over the day either over a normal 12/12 light/dark cycle, or in a control condition where the mice were also housed in 12/12 conditions but the light did not turn on for the last day, the day of tissue collection.
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Web link |
https://pubmed.ncbi.nlm.nih.gov/39244753/
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Contributor(s) |
Kushinsky D, Tsivourakis E, Apelblat D, Roethler O, Breger-Mikulincer M, Cohen-Kashi Malina K, Spiegel I |
Citation(s) |
39244753 |
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Submission date |
Nov 01, 2022 |
Last update date |
Dec 10, 2024 |
Contact name |
Daniella Apelblat |
E-mail(s) |
daniella.apelblat2@gmail.com
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Organization name |
Weizmann Institute of Science
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Department |
Neuroscience
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Lab |
Spiegel
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Street address |
Hertzl
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City |
Rehovot |
ZIP/Postal code |
6451311 |
Country |
Israel |
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Platforms (1) |
GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
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Samples (57)
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GSM6701509 |
total VisCtx RNA, Dark condition, ZT0, biorep1 |
GSM6701510 |
total VisCtx RNA, Dark condition, ZT0, biorep2 |
GSM6701511 |
total VisCtx RNA, Dark condition, ZT0, biorep3 |
GSM6701512 |
total VisCtx RNA, Dark condition, ZT0, biorep4 |
GSM6701513 |
total VisCtx RNA, Dark condition, ZT1, biorep1 |
GSM6701514 |
total VisCtx RNA, Dark condition, ZT1, biorep2 |
GSM6701515 |
total VisCtx RNA, Dark condition, ZT1, biorep3 |
GSM6701516 |
total VisCtx RNA, Dark condition, ZT3, biorep1 |
GSM6701517 |
total VisCtx RNA, Dark condition, ZT3, biorep2 |
GSM6701518 |
total VisCtx RNA, Dark condition, ZT3, biorep3 |
GSM6701519 |
total VisCtx RNA, Dark condition, ZT3, biorep4 |
GSM6701520 |
total VisCtx RNA, Dark condition, ZT7.5, biorep1 |
GSM6701521 |
total VisCtx RNA, Dark condition, ZT7.5, biorep2 |
GSM6701522 |
total VisCtx RNA, Dark condition, ZT7.5, biorep3 |
GSM6701523 |
total VisCtx RNA, Dark condition, ZT7.5, biorep4 |
GSM6701524 |
total VisCtx RNA, Dark condition, ZT11.5, biorep1 |
GSM6701525 |
total VisCtx RNA, Dark condition, ZT11.5, biorep2 |
GSM6701526 |
total VisCtx RNA, Dark condition, ZT11.5, biorep3 |
GSM6701527 |
total VisCtx RNA, Dark condition, ZT11.5, biorep4 |
GSM6701528 |
total VisCtx RNA, Dark condition, ZT13, biorep1 |
GSM6701529 |
total VisCtx RNA, Dark condition, ZT13, biorep2 |
GSM6701530 |
total VisCtx RNA, Dark condition, ZT13, biorep3 |
GSM6701531 |
total VisCtx RNA, Dark condition, ZT15, biorep1 |
GSM6701532 |
total VisCtx RNA, Dark condition, ZT15, biorep2 |
GSM6701533 |
total VisCtx RNA, Dark condition, ZT15, biorep3 |
GSM6701534 |
total VisCtx RNA, Dark condition, ZT15, biorep4 |
GSM6701535 |
total VisCtx RNA, Dark condition, ZT18, biorep1 |
GSM6701536 |
total VisCtx RNA, Dark condition, ZT18, biorep2 |
GSM6701537 |
total VisCtx RNA, Dark condition, ZT18, biorep3 |
GSM6701538 |
total VisCtx RNA, Dark condition, ZT18, biorep4 |
GSM6701539 |
total VisCtx RNA, Light condition, ZT1, biorep1 |
GSM6701540 |
total VisCtx RNA, Light condition, ZT1, biorep2 |
GSM6701541 |
total VisCtx RNA, Light condition, ZT1, biorep3 |
GSM6701542 |
total VisCtx RNA, Light condition, ZT1, biorep4 |
GSM6701543 |
total VisCtx RNA, Light condition, ZT3, biorep1 |
GSM6701544 |
total VisCtx RNA, Light condition, ZT3, biorep2 |
GSM6701545 |
total VisCtx RNA, Light condition, ZT3, biorep3 |
GSM6701546 |
total VisCtx RNA, Light condition, ZT3, biorep4 |
GSM6701547 |
total VisCtx RNA, Light condition, ZT7.5, biorep1 |
GSM6701548 |
total VisCtx RNA, Light condition, ZT7.5, biorep2 |
GSM6701549 |
total VisCtx RNA, Light condition, ZT7.5, biorep3 |
GSM6701550 |
total VisCtx RNA, Light condition, ZT7.5, biorep4 |
GSM6701551 |
total VisCtx RNA, Light condition, ZT11.5, biorep1 |
GSM6701552 |
total VisCtx RNA, Light condition, ZT11.5, biorep2 |
GSM6701553 |
total VisCtx RNA, Light condition, ZT11.5, biorep3 |
GSM6701554 |
total VisCtx RNA, Light condition, ZT11.5, biorep4 |
GSM6701555 |
total VisCtx RNA, Light condition, ZT13, biorep1 |
GSM6701556 |
total VisCtx RNA, Light condition, ZT13, biorep2 |
GSM6701557 |
total VisCtx RNA, Light condition, ZT13, biorep3 |
GSM6701558 |
total VisCtx RNA, Light condition, ZT13, biorep4 |
GSM6701559 |
total VisCtx RNA, Light condition, ZT15, biorep1 |
GSM6701560 |
total VisCtx RNA, Light condition, ZT15, biorep2 |
GSM6701561 |
total VisCtx RNA, Light condition, ZT15, biorep3 |
GSM6701562 |
total VisCtx RNA, Light condition, ZT15, biorep4 |
GSM6701563 |
total VisCtx RNA, Light condition, ZT18, biorep1 |
GSM6701564 |
total VisCtx RNA, Light condition, ZT18, biorep2 |
GSM6701565 |
total VisCtx RNA, Light condition, ZT18, biorep3 |
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Relations |
BioProject |
PRJNA896494 |
Supplementary file |
Size |
Download |
File type/resource |
GSE216973_normalized_counts.xls.gz |
7.1 Mb |
(ftp)(http) |
XLS |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
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