GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE217148 Query DataSets for GSE217148
Status Public on Nov 07, 2022
Title Genomic and Transcriptional Characterisation of Carbapenem and Colistin Resistance Mechanisms in Klebsiella pneumoniae
Organisms Acinetobacter baumannii; Enterobacter cloacae; Klebsiella pneumoniae; Enterobacter asburiae; Enterobacter bugandensis; Enterobacter cloacae complex sp. R_G8
Experiment type Expression profiling by high throughput sequencing
Summary The transcriptional, epigenomic, and genomic profiles of K. pneumoniae isolates were characterised to identify novel colistin and carbapenem resistance mechanisms. The genomic DNA and total RNA of the isolates were isolated and sequenced on PacBio.
Overall design DNA-seq sequenced on PACBIO platform and RNA-seq sequenced on Illumina MiSeq.
Contributor(s) Mmatli M, Mbelle N, Mmatumelo Seipei Leshaba T, Lebogang Skosana B, Osei Sekyere J
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA850834
Submission date Nov 02, 2022
Last update date Nov 09, 2022
Contact name John Osei Sekyere
Phone 0123192251
Organization name University of Pretoria
Department Department of Medical Microbiology
Lab Molecular Microbiology
Street address 05 Bopheloweg Off Dr. Savage Road
City Pretoria
State/province Gauteng
ZIP/Postal code 0084
Country South Africa
Platforms (12)
GPL19442 Illumina MiSeq (Acinetobacter baumannii)
GPL27625 Sequel (Klebsiella pneumoniae)
GPL32492 Sequel (Enterobacter cloacae)
Samples (22)
GSM6705690 KP4
GSM6705691 KP13
GSM6705692 KP14

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE217148_A_baumannii_280820_reference_genome.pdf 207.0 Kb (ftp)(http) PDF
GSE217148_A_baumannii_K09-14_reference_genome.pdf 289.9 Kb (ftp)(http) PDF
GSE217148_E_asburiae_AEB30_reference_genome.pdf 164.0 Kb (ftp)(http) PDF
GSE217148_E_bugandensis_247_reference_genome.pdf 7.5 Mb (ftp)(http) PDF
GSE217148_E_cloacae_ATCC13047.pdf 265.7 Kb (ftp)(http) PDF
GSE217148_K_pneumoniae_mgh64_reference_genome.pdf 304.7 Kb (ftp)(http) PDF
GSE217148_RAW.tar 1.2 Gb (http)(custom) TAR (of CSV, DIFF, GFF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap