|
| Status |
Public on Nov 07, 2022 |
| Title |
Genomic and Transcriptional Characterisation of Carbapenem and Colistin Resistance Mechanisms in Klebsiella pneumoniae |
| Organisms |
Acinetobacter baumannii; Enterobacter cloacae; Klebsiella pneumoniae; Enterobacter asburiae; Enterobacter bugandensis; Enterobacter cloacae complex sp. R_G8 |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
The transcriptional, epigenomic, and genomic profiles of K. pneumoniae isolates were characterised to identify novel colistin and carbapenem resistance mechanisms. The genomic DNA and total RNA of the isolates were isolated and sequenced on PacBio.
|
| |
|
| Overall design |
DNA-seq sequenced on PACBIO platform and RNA-seq sequenced on Illumina MiSeq.
|
| |
|
| Contributor(s) |
Mmatli M, Mbelle N, Mmatumelo Seipei Leshaba T, Lebogang Skosana B, Osei Sekyere J |
| Citation missing |
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| BioProject |
PRJNA850834 |
| |
| Submission date |
Nov 02, 2022 |
| Last update date |
Nov 09, 2022 |
| Contact name |
John Osei Sekyere |
| E-mail(s) |
jod14139@gmail.com
|
| Phone |
0123192251
|
| Organization name |
University of Pretoria
|
| Department |
Department of Medical Microbiology
|
| Lab |
Molecular Microbiology
|
| Street address |
05 Bopheloweg Off Dr. Savage Road
|
| City |
Pretoria |
| State/province |
Gauteng |
| ZIP/Postal code |
0084 |
| Country |
South Africa |
| |
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| Platforms (12)
|
| GPL19442 |
Illumina MiSeq (Acinetobacter baumannii) |
| GPL27625 |
Sequel (Klebsiella pneumoniae) |
| GPL32492 |
Sequel (Enterobacter cloacae) |
| GPL32755 |
Illumina MiSeq (Klebsiella pneumoniae) |
| GPL32756 |
Illumina MiSeq (Enterobacter cloacae) |
| GPL32812 |
Sequel (Enterobacter asburiae) |
| GPL32813 |
Sequel (Acinetobacter baumannii) |
| GPL32814 |
Sequel (Enterobacter bugandensis) |
| GPL32815 |
Sequel (Enterobacter cloacae complex sp. R_G8) |
| GPL32816 |
Illumina MiSeq (Enterobacter asburiae) |
| GPL32817 |
Illumina MiSeq (Enterobacter bugandensis) |
| GPL32818 |
Illumina MiSeq (Enterobacter cloacae complex sp. R_G8) |
|
| Samples (22)
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