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| Status |
Public on Mar 07, 2023 |
| Title |
Monocytes re-enter the bone marrow during fasting and alter the host response to infection |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The aim was to investigate transcriptional differences between circulating Ly6Chi monocytes under feeding and fasting/re-feeding conditions
Ly6Chi monocytes were sorted from blood after contious feeding or after a 24h fast follwed by a four hour re-feeding period
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| Overall design |
Expression profiling by high throughput sequencing
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| Contributor(s) |
Janssen H, Swirski FK, Kahles F, Liu D, Downey J, Koekkoek LL, Roudko V, D'Souza D, McAlpine CS, Halle L, Poller WC, Chan CT, Shun S, Mindur JE, Kiss MG, Singh S, Anzai A, Iwamoto Y, Kohler RH, Chetal K, Sadreyev RI, Weissleder R, Kim-Schulze S, Merad M, Nahrendorf M |
| Citation(s) |
36827982 |
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| Submission date |
Nov 09, 2022 |
| Last update date |
Mar 07, 2023 |
| Contact name |
Darwin D'Souza |
| Organization name |
Human Immune Monitoring Center
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| Department |
ImmunoBio
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| Street address |
1470 Madison Avenue
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10029 |
| Country |
USA |
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| Platforms (2) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA899794 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE217597_RNASeq_salmon.merged.gene_counts.tsv.gz |
325.8 Kb |
(ftp)(http) |
TSV |
| GSE217597_SCrnaseq_filtered_feature_bc_matrix.h5 |
63.4 Mb |
(ftp)(http) |
H5 |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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