NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE217621 Query DataSets for GSE217621
Status Public on Jul 13, 2023
Title The non-redundant functions of PIWI family proteins in gametogenesis in golden hamsters
Organisms Mesocricetus auratus; Mus musculus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary The piRNA pathway is essential for female fertility in golden hamsters and likely humans, but not in mice. However, the role of individual PIWIs in reproduction remains poorly understood outside of mice. Here, using golden hamsters, we establish dynamic expression profiles and subcellular localization for all four PIWIs and characterize their associated reproductive defects in knockout mutants. In female golden hamsters, PIWIL1 and PIWIL3 are highly expressed throughout oogenesis and early embryogenesis, while PIWIL1 knockout leads to sterility, and PIWIL3 deficiency results in subfertility with lagging zygotic development. PIWIL1 can partially compensate for TE silencing and transcriptional regulation in PIWIL3 knockout females, but not vice versa. PIWIL1 and PIWIL4 are the predominant PIWIs expressed in adult or postnatal testes, respectively, while PIWIL2 is present in both stages. Notably, in golden hamsters, none of the differences were found between pre-pachytene and pachytene piRNAs characteristic of mice. Loss of any PIWI expressed in testes leads to sterility and severe but distinct spermatogenesis disorders, which are markedly less severe in mice. These findings expand our understanding of the non-redundant PIWI-piRNA regulatory functions in gametogenesis and early embryogenesis in golden hamster, increasing the value of this model for studying human fertility.
 
Overall design Using golden hamsters, establish dynamic expression profiles and subcellular localization for all four PIWIs and characterize their associated reproductive defects in knockout mutants.
Web link https://www.nature.com/articles/s41467-023-40650-x
 
Contributor(s) Lv X, Xiao W, Zhang H, Wu L
Citation(s) 37644029
Submission date Nov 09, 2022
Last update date Aug 30, 2023
Contact name Wen Xiao
E-mail(s) xiaowen@sibcb.ac.cn
Organization name Shanghai Institutes for Biological Sciences, CAS
Department Institute of Biochemistry and Cell Biology
Lab Ligang Wu
Street address 320 Yueyang Road
City Shanghai
ZIP/Postal code 200031
Country China
 
Platforms (2)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
GPL28997 Illumina NovaSeq 6000 (Mesocricetus auratus)
Samples (214)
GSM6722732 F1R68 WT-MII2-1
GSM6722733 F1R69 WT-MII2-2
GSM6722734 F1R70 WT-MII2-3
Relations
BioProject PRJNA899845

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE217621_P1KOtestis_processed_file.xlsx 7.5 Mb (ftp)(http) XLSX
GSE217621_oocyte_processed_file.xlsx 8.6 Mb (ftp)(http) XLSX
GSE217621_smRNA_piRNA_file.tar.gz 353.1 Mb (ftp)(http) TAR
GSE217621_spermatogenesis_processed_file.xlsx 3.9 Mb (ftp)(http) XLSX
GSE217621_testis_processed_file.xlsx 4.3 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap