|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Oct 16, 2023 |
Title |
Transcriptomic analysis of leaves and leaf cells from the medicinal plant Catharanthus roseus |
Organism |
Catharanthus roseus |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
The goal of this study is to investigate differential transcription profiles of leaf material/cells accumulating different levels of alkaloids in the anticancer plant Catharanthus roseus.
|
|
|
Overall design |
Gene expression profiling was performed for three biological replicates of: i) protoplasts of specific leaf cells specialized in alkaloid accumulation (idioblasts) and their control mesophyll protoplasts, total leaf protoplasts, and origin leaves; ii) 4 different developmental stages of leaves from plants growing in two different conditions leading to differential accumulation of alkaloids.
|
|
|
Contributor(s) |
Ribeiro R, Guedes JG, Fonseca NA, Sottomayor M |
Citation(s) |
37804484 |
|
Submission date |
Nov 12, 2022 |
Last update date |
Oct 17, 2023 |
Contact name |
Mariana Sottomayor |
E-mail(s) |
mssottom@fc.up.pt
|
Organization name |
CIBIO, Research Centre in Biodiversity and Genetic Resources
|
Department |
PLANTBIO
|
Street address |
Rua Padre Armando Quintas, No. 7
|
City |
Vairao |
State/province |
Select: |
ZIP/Postal code |
4485-661 |
Country |
Portugal |
|
|
Platforms (2) |
GPL32852 |
Illumina HiSeq 1500 (Catharanthus roseus) |
GPL32853 |
MinION (Catharanthus roseus) |
|
Samples (35)
|
GSM6727634 |
Leaf protoplasts, idioblasts, biol rep 1 |
GSM6727635 |
Leaf protoplasts, idioblasts, biol rep 2 |
GSM6727636 |
Leaf protoplasts, idioblasts, biol rep 3 |
GSM6727637 |
Leaves, pair 1, indoors, biol rep 1 |
GSM6727638 |
Leaves, pair 1, indoors, biol rep 2 |
GSM6727639 |
Leaves, pair 1, indoors, biol rep 3 |
GSM6727640 |
Leaves, pair 1, outdoors, biol rep 1 |
GSM6727641 |
Leaves, pair 1, outdoors, biol rep 2 |
GSM6727642 |
Leaves, pair 1, outdoors, biol rep 3 |
GSM6727643 |
Leaves, pair 2, indoors, biol rep 1 |
GSM6727644 |
Leaves, pair 2, indoors, biol rep 2 |
GSM6727645 |
Leaves, pair 2, indoors, biol rep 3 |
GSM6727646 |
Leaves, pair 2, outdoors, biol rep 1 |
GSM6727647 |
Leaves, pair 2, outdoors, biol rep 2 |
GSM6727648 |
Leaves, pair 2, outdoors, biol rep 3 |
GSM6727649 |
Leaves, pair 3, indoors, biol rep 1 |
GSM6727650 |
Leaves, pair 3, indoors, biol rep 2 |
GSM6727651 |
Leaves, pair 3, indoors, biol rep 3 |
GSM6727652 |
Leaves, pair 3, outdoors, biol rep 1 |
GSM6727653 |
Leaves, pair 3, outdoors, biol rep 2 |
GSM6727654 |
Leaves, pair 3, outdoors, biol rep 3 |
GSM6727655 |
Leaves, pair 4, indoors, biol rep 1 |
GSM6727656 |
Leaves, pair 4, indoors, biol rep 2 |
GSM6727657 |
Leaves, pair 4, indoors, biol rep 3 |
GSM6727658 |
Leaves, pair 4, outdoors, biol rep 1 |
GSM6727659 |
Leaves, pair 4, outdoors, biol rep 2 |
GSM6727660 |
Leaves, pair 4, outdoors, biol rep 3 |
GSM6727661 |
Leaves, biol rep 1 |
GSM6727662 |
Leaves, biol rep 2 |
GSM6727663 |
Leaf protoplasts, mesophyll, biol rep 1 |
GSM6727664 |
Leaf protoplasts, mesophyll, biol rep 2 |
GSM6727665 |
Leaf protoplasts, mesophyll, biol rep 3 |
GSM6727666 |
Leaf protoplasts, total, biol rep 1 |
GSM6727667 |
Leaf protoplasts, total, biol rep 2 |
GSM6727668 |
Leaf protoplasts, total, biol rep 3 |
|
Relations |
BioProject |
PRJNA901021 |
Supplementary file |
Size |
Download |
File type/resource |
GSE217852_Catharanthus_transcriptome_IDIOplus.fasta.gz |
19.6 Mb |
(ftp)(http) |
FASTA |
GSE217852_RAW.tar |
4.0 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
|
|
|
|
|