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| Status |
Public on Jun 26, 2023 |
| Title |
Localization of the Drosophila pioneer factor GAF to subnuclear foci is driven by DNA binding and required to silence satellite repeat expression |
| Organism |
Drosophila melanogaster |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
Other
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37478844 |
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| Submission date |
Nov 15, 2022 |
| Last update date |
Sep 25, 2023 |
| Contact name |
Melissa M Harrison |
| E-mail(s) |
mharrison3@wisc.edu
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| Organization name |
University of Wisconsin Madison
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| Department |
Biomolecular Chemistry
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| Lab |
1135 Biochemical Sciences Bldg
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| Street address |
420 Henry Mall
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| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53706 |
| Country |
USA |
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| Platforms (3) |
| GPL19132 |
Illumina NextSeq 500 (Drosophila melanogaster) |
| GPL21306 |
Illumina HiSeq 4000 (Drosophila melanogaster) |
| GPL25244 |
Illumina NovaSeq 6000 (Drosophila melanogaster) |
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| Samples (26)
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| GSM6732880 |
DBD-sfGFP, GFP IP, 2 |
| GSM6732881 |
sfGFP-GAF degrad, H3K9me3 IP, 1 |
| GSM6732882 |
sfGFP-GAF degrad, H3K9me3 IP, 2 |
| GSM6732883 |
sfGFP-GAF control, H3K9me3 IP, 1 |
| GSM6732884 |
sfGFP-GAF control, H3K9me3 IP, 2 |
| GSM6732885 |
sfGFP-GAF degrad, H3K9me3 Input, 1 |
| GSM6732886 |
sfGFP-GAF degrad, H3K9me3 Input, 2 |
| GSM6732887 |
sfGFP-GAF control, H3K9me3 Input, 1 |
| GSM6732888 |
sfGFP-GAF control, H3K9me3 Input, 2 |
| GSM7133972 |
HiC-66_GAFcontrol_rep1 |
| GSM7133973 |
HiC-67_GAFdegrad_rep1 |
| GSM7133974 |
HiC-68_GAFcontrol_rep2 |
| GSM7133975 |
HiC-69_GAFdegrad_rep2 |
| GSM7133976 |
HiC-71_GAFdegrad_rep3 |
| GSM7133977 |
HiC-72_GAFcontrol_rep3 |
| GSM7287693 |
2-3H_control_IP_rep1 |
| GSM7287694 |
2-3H_control_IP_rep2 |
| GSM7287695 |
2-3H_PQ-mut_IP_rep1 |
| GSM7287696 |
2-3H_PQ-mut_IP_rep2 |
| GSM7287697 |
2-3H_control_input_rep1 |
| GSM7287698 |
2-3H_control_input_rep2 |
| GSM7287699 |
2-3H_PQ-mut_input_rep1 |
| GSM7287700 |
2-3H_PQ-mut_input_rep2 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE218019 |
Localization of the pioneer factor GAF to subnuclear foci is driven by DNA binding and required to silence satellite repeat expression [ChIP-Seq] |
| GSE228614 |
Hi-C of GAF-depleted Drosophila melanogaster embryos |
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| Relations |
| BioProject |
PRJNA901924 |
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