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| Status |
Public on Sep 22, 2023 |
| Title |
Nanostring gene expression data, comparison of response to subcutaneously implanted porcine-derived decellularized myocardial matrix hydrogels in mast cell deficient mice compared to deficient mice with mast cell engraftment and wild-type C57BL6/J mice |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
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| Summary |
Nanostring gene expression count data from the Nanostring Mouse Immunology Panel consisting of 546 genes with 15 internal controls from excised subcutaneous injections of porcine derived decellularized myocardial matrix hydrogels that were lysed and extracted for total RNA. Data was then exported through the manufacturer nSolverTM Analysis Software 4.0 and analyzed through custom R scripts under R versions 4.04 with normalized counts determined by the NanostringDiff package and thresholding outside of one standard deivation from the mean signal from the negative control probes.
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| Overall design |
In this study, porcine-derived decellularized myocardial matrix hydrogels were injected into the dorsal region of male 11-13 week old mast cell deficient mice (w-sh mice: B6.Cg-KitW-sh/HNihrJaeBsmJ, Jackson Laboratory, Sacramento, CA), mast cell engrafted mice and wild-type C57BL6/J. Hydrogels were isolated at 11 days post-injection based on latest timepoint for discernible presence hydrogel degradation profile and analyzed for gene expression analysis by Nanostring Mouse Immunology Panel. Mast cell-engrafted mice were created by delivering eight to ten 100 µL subcutaneous injections of bone marrow differentiated mast cells in DMEM totaling 4 million cells. Injections were at evenly spaced intervals throughout the dorsal region of 4-6 week old deficient mice.
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| Web link |
https://www.nature.com/articles/s41536-023-00324-0
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| Contributor(s) |
Wang RM, Christman KL |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Nov 19, 2022 |
| Last update date |
Dec 26, 2023 |
| Contact name |
Raymond Ma Wang |
| E-mail(s) |
ruimawang@gmail.com
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| Organization name |
University of California San Diego
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| Department |
Bioengineering
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| Lab |
Sanford Consortium for Regenerative Medicine
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| Street address |
2880 Torrey Pines Scenic Dr
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| City |
La Jolla |
| State/province |
California |
| ZIP/Postal code |
92037 |
| Country |
USA |
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| Platforms (1) |
| GPL30438 |
nCounter Mouse Immunology Panel [NS_Immunology_Mm_C2269] |
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| Samples (24)
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| Relations |
| BioProject |
PRJNA903402 |
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