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Series GSE218812 Query DataSets for GSE218812
Status Public on Apr 27, 2024
Title Effects of dichloroacetate on transcriptional networks in rat Schwann cells and primary sensory neurons
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Peripheral neuropathy (PN) is a debilitating side effect of many pharmaceutical agents and is among the most common reasons why patients stop their treatment early. Dichloroacetate (DCA) is a therapeutic drug that inhibits the pyruvate dehydrogenase complex (PDC), thereby modulating metabolic flux in cells. Despite success in improving outcomes of disease, reversible PN has been the single factor limiting the therapeutic potential for DCA. As a result, clinical trials for the drug have been halted prematurely. Establishing toxicity pathways in cells of the peripheral nervous system (PNS) that are involved in DCA-induced PN would provide new opportunities to intervene and mitigate adverse side effects associated with DCA. We investigated the molecular mechanisms underlying DCA-induced injury to both glial and neuronal cells. It was hypothesized that SCs would show activated transcriptional responses associated with oxidative damage and apoptosis at therapeutic doses while these responses will be absent or reduced in DRGs. Experiments were expected to pinpoint molecular mechanisms underlying DCA-induced neurotoxicity, and to reveal the window of therapeutic intervention to reduce side effects associated with DCA in clinical settings.
 
Overall design RNA-seq profiling of dichloroacetate on transcriptional networks in rat Schwann cells and primary sensory neurons
 
Contributor(s) Martyniuk C
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Submission date Nov 26, 2022
Last update date Apr 27, 2024
Contact name Christopher Martyniuk
E-mail(s) cmartyn@ufl.edu
Phone 3523173905
Organization name University of Florida
Street address 8891 SW 79th Avenue
City Gainesville
State/province FL
ZIP/Postal code 32608
Country USA
 
Platforms (1)
GPL25947 Illumina NovaSeq 6000 (Rattus norvegicus)
Samples (12)
GSM6756902 SC_C1
GSM6756903 SC_C3
GSM6756904 SC_C4
Relations
BioProject PRJNA905669

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218812_DRG_DCAvsDRG_Cntl_deg.txt.gz 3.0 Mb (ftp)(http) TXT
GSE218812_SC_DCAvsSC_Cntl_deg.txt.gz 2.6 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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