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Series GSE21967 Query DataSets for GSE21967
Status Public on Dec 31, 2010
Title Characterization of pathogen specific expression of host immune response genes in Mycobacterium and Anaplasma spp. infection in ruminants
Platform organism Bos taurus
Sample organism Cervus elaphus
Experiment type Expression profiling by array
Summary Anaplasma and Mycobacterium species are known to modify gene expression in ruminants. The objectives of this study were (a) to characterize global gene expression profiles in European red deer (Cervus elaphus) in response to Anaplasma ovis and A. ovis/Mycobacterium bovis/M. avium sub. paratuberculosis (MAP) infections, (b) to compare the expression of immune response genes between A. ovis- and A. ovis/M. bovis/MAP-infected deer, and (c) to characterize the differential expression of immune response genes identified in red deer in cattle infected with M. bovis and A. marginale. The results of this study showed that global gene differential expression in A. ovis- and A. ovis/M. bovis/MAP-infected deer results in the modification of common and pathogen-specific cellular biological processes. The differential expression of host immune response genes also showed pathogen-specific signatures and the effect of infection with multiple pathogens on red deer host immune response. These results suggested that intracellular bacteria from Anaplasma and Mycobacterium genera use similar mechanisms to infect and multiply within ruminant host cells while pathogen-specific mechanisms underline differences that could contribute to disease characterization and diagnosis in ruminants.
 
Overall design A gene expression pre analysis was made in deers naturally infected with Anaplasma ovis and Mycobacterium complex using Affymetrix Bos taurus microarray to detect differentialy expressed genes. The immune response genes with variation in expression were analyzed by real time RT-PCR in the same samples and a bigger group of deers. A real time RT-PCR analysis was also made in Bos taurus naturally infected with Anaplasma marignale.
 
Contributor(s) Galindo RC, Ayllon N, Carta T, Gortázar C, de la Fuente J
Citation(s) 20952064
Submission date May 23, 2010
Last update date Dec 17, 2012
Contact name Ruth Cecilia Galindo
Organization name Instituto de Investigacion en Recursos Cinegéticos
Department Animal Health
Lab Genomic
Street address Ronda de Toledo s/n
City Ciudad Real
State/province Ciudad Real
ZIP/Postal code 13005
Country Spain
 
Platforms (1)
GPL2112 [Bovine] Affymetrix Bovine Genome Array
Samples (7)
GSM546237 Cervus elaphus naturally infected with Anaplasma ovis sample 1
GSM546238 Cervus elaphus naturally infected with Anaplasma ovis sample 2
GSM546239 Cervus elaphus naturally infected with Anaplasma ovis sample 3
Relations
BioProject PRJNA126781

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE21967_RAW.tar 12.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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