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Series GSE220242 Query DataSets for GSE220242
Status Public on Nov 07, 2023
Title Collective signalling drives rapid jumping between cell states
Organism Dictyostelium discoideum
Experiment type Expression profiling by high throughput sequencing
Summary A continuous single cell transcriptomic time course of Dictyostelium discoideum early development.
 
Overall design To capture development in a continuous manner, we collected cells from plaques of cells feeding on their bacterial food source. We collected a continuous streak of cells, from the bacterial zone through to the mounds, then generated single cell transcriptomes for 5329 cells.
 
Contributor(s) Antolović V, Lenn T, Westbrook E, Chubb JR
Citation(s) 37921687
Submission date Dec 06, 2022
Last update date Jan 03, 2024
Contact name Vlatka Antolovic
E-mail(s) v.antolovic@ucl.ac.uk
Organization name University College London
Department MRC Laboratory for Molecular Cell Biology
Street address Gower Street
City London
ZIP/Postal code WC1E 6BT
Country United Kingdom
 
Platforms (1)
GPL26360 Illumina NextSeq 500 (Dictyostelium discoideum)
Samples (2)
GSM6797146 GC-JC-8721-1
GSM6797147 GC-JC-8721-2
Relations
BioProject PRJNA909293

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220242_RAW.tar 12.1 Mb (http)(custom) TAR (of CSV)
GSE220242_norm_counts.csv.gz 54.0 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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