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Series GSE220697 Query DataSets for GSE220697
Status Public on Feb 08, 2024
Title Role of ATP-dependent chromatin remodellers in regulating global gene expression in Saccharomyces cerevisiae
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary We report change in the gene expression levels and this change is associated with the change in higher order folding upon deletion of ATP-dependent chromatin remodellers.
 
Overall design RNA was extracted from both wildtype and triple deletion (ISW1, ISW2 and CHD1) strain using acidic phenol: chloroform method, ribosomal RNA was depleted by ribozero kit, cDNA was generated by kit, and cDNA library were prepared for NGS and sequenced.
 
Contributor(s) Hamid Wani A, Rashid F
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Submission date Dec 12, 2022
Last update date Feb 09, 2024
Contact name Ajaz ul Hamid Wani
E-mail(s) ahwani@kashmiruniversity.ac.in
Phone 9797918365
Organization name University of Kashmir
Department Biotechnology
Lab Genome Organization
Street address Hazratbal
City Srinagar
State/province Jammu and Kashmir
ZIP/Postal code 190006
Country India
 
Platforms (1)
GPL17342 Illumina HiSeq 2500 (Saccharomyces cerevisiae)
Samples (4)
GSM6809892 WT RNA replicate-1
GSM6809893 TD RNA replicate-1
GSM6809894 WT RNA replicate-2
Relations
BioProject PRJNA911183

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE220697_RAW.tar 88.3 Mb (http)(custom) TAR (of TDF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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