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Series GSE221198 Query DataSets for GSE221198
Status Public on May 23, 2023
Title Ovarian follicle extracellular vesicle-microRNAs mediated response of beef cows to environmental heat stress
Organism Bos taurus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Elevated ambient temperature during the summer season is a main cause of stress in dairy and beef cows, leading to impaired reproductive function and fertility. Follicular fluid extracellular vesicles (FF-EVs) play an important role in intrafollicular cellular communication by in part mediating the deleterious effects of heat stress (HS). Here we aimed to investigate the changes in FF-EV miRNA cargoes in beef cows in response to HS during the summer (SUM) compared to the winter (WIN) season using high throughput sequencing of FF-EV-coupled miRNAs.
 
Overall design dry beef cows (n=11) were subjected to synchronization and stimulation for follicular dynamics. Ovum pick-up (OPU) was conducted on all animals in the summer (August 2021) and winter (February 2021) seasons by ultrasound-guided transvaginal follicle aspiration. Rectal temperatures were collected on each OPU and environmental data were collected daily for three weeks before each OPU. The FFs were collected from each target group (4 biological replicates/group; 8 mL FF/replicate) and subjected to differential centrifugation and high-speed ultracentrifugation (120,000xg for 70 min x2) to isolate EVs. Isolated EVs were characterized using a western blot, nanosight tracking analysis, and transmission electron microscopy. MiRNA-enriched total RNA was isolated from EVs and small-RNA library preparation and RNAseq (NovaSeq6000; Illumina) were performed.
Web link https://ovarianresearch.biomedcentral.com/articles/10.1186/s13048-023-01181-7
 
Contributor(s) Gad A, Joyce K, Menjivar NG, Heredia D, Rojas CS, Gonella-Diaza A, Tesfaye D
Citation(s) 37221550
Submission date Dec 16, 2022
Last update date May 30, 2023
Contact name Ahmed Gad
E-mail(s) ahmed.y.gad@agr.cu.edu.eg
Organization name Colorado State University
Department Biomedical Sciences
Lab ARBL
Street address 3107 Rampart Rd
City Fort Collins
State/province Colorado
ZIP/Postal code 80521
Country USA
 
Platforms (1)
GPL26012 Illumina NovaSeq 6000 (Bos taurus)
Samples (8)
GSM6855678 SUM_1
GSM6855679 SUM_2
GSM6855680 SUM_3
Relations
BioProject PRJNA913175

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221198_Bovine_FF-EV_miRNA_CPM.xlsx 74.6 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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