|
| Status |
Public on Mar 01, 2023 |
| Title |
Differential regulation of primary root growth during water-deficit stress in cotton |
| Organism |
Gossypium hirsutum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Cotton seedlings were subjected to water-deficit stress along with control condition for 24 hours or 48 hours and tissues emcompassing the elongation zone of primary roots were analysed for differential accumulated transcripts compared to control.
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| |
|
| Overall design |
Cotton seedlings were subjected to water deficit for 24 and 48 hours and primary root tips were collected in liquid nitrogen. Total RNA was isolated and mRNA profile were generated by sequencing using Illumina NextSeq 500.
|
| |
|
| Contributor(s) |
Kang J, Sen S, Sharp RE, Oliver MJ |
| Citation(s) |
36829845 |
| |
| Submission date |
Dec 19, 2022 |
| Last update date |
Mar 15, 2023 |
| Contact name |
Sidharth Sen |
| E-mail(s) |
ssz74@mail.missouri.edu
|
| Organization name |
University of Missouri
|
| Department |
The Division of Plant Sciences and Technology
|
| Lab |
Sharp Lab
|
| Street address |
Agriculture Bldg, University of Missouri
|
| City |
Columbia |
| State/province |
Missouri |
| ZIP/Postal code |
65201 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL27127 |
Illumina NextSeq 500 (Gossypium hirsutum) |
|
| Samples (12)
|
| GSM6857944 |
Well-watered 24 h cotton primary root tip replicate 1 |
| GSM6857945 |
Well-watered 24 h cotton primary root tip replicate 2 |
| GSM6857946 |
Well-watered 24 h cotton primary root tip replicate 3 |
| GSM6857947 |
Water-stressed 24 h cotton primary root tip replicate 1 |
| GSM6857948 |
Water-stressed 24 h cotton primary root tip replicate 2 |
| GSM6857949 |
Water-stressed 24 h cotton primary root tip replicate 3 |
| GSM6857950 |
Well-watered 48 h cotton primary root tip replicate 1 |
| GSM6857951 |
Well-watered 48 h cotton primary root tip replicate 2 |
| GSM6857952 |
Well-watered 48 h cotton primary root tip replicate 3 |
| GSM6857953 |
Water-stressed 48 h cotton primary root tip replicate 1 |
| GSM6857954 |
Water-stressed 48 h cotton primary root tip replicate 2 |
| GSM6857955 |
Water-stressed 48 h cotton primary root tip replicate 3 |
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| This SubSeries is part of SuperSeries: |
| GSE221296 |
Differential regulation of primary root growth during water-deficit stress |
|
| Relations |
| BioProject |
PRJNA913848 |
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