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Series GSE221403 Query DataSets for GSE221403
Status Public on Feb 02, 2023
Title Lifelong tissue memory relies on spatially organized dedicated progenitors located distally from the injury [bulkRNAseq]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary It is believed epithelial cells that have participated in a wound repair elicit a more efficient but locally  restricted response to future injuries. However here we show that the cell adaptation resulting from a localised tissue damage has a wide spatial impact at a scale not previously noticed. We demonstrate that away from injured site, after a first injury a specific epithelial stem cell population gives rise to long term wound-memory progenitors residing in their own niche of origin. Notably these progenitors have not taken part in the first wound healing but become pre-activated through priming. This adaptation differs from classical features of trained immunity previously shown to be adopted by other epithelial stem cells. Our newly identified wound-distal memory cells display an intrinsic pre-activated state, maintained at chromatin and transcriptional level, leading to an enhanced wound repair ability that can be partially recapitulated through epigenetic perturbation even in absence of an injury. Importantly, the harmful consequences of wound repair, such as exacerbated tumorigenesis, occur within these primed cells and follow their spatial distribution. Overall, we show that sub-organ scale adaptation of an injury relies on spatially organized and memory-dedicated progenitors, characterized by a chromatin actionable cell state, that establishes an epigenetic field cancerization and predisposes to tumour onset.
 
Overall design Lrig1 GL cells were isolated from tail epidermis at 8w pw1 from Distal memory or Ctrl region and FACS sorted to enrich for upper-HF cells (Sca1+). Cells were then plated and cultured for 1 week before transcriptome was assessed by bulk RNA-Seq
 
Contributor(s) Levron CL, Watanabe M, Proserpio V, Piacenti G, Lauria A, Kaltenbach S, Tamburrini A, Nohara T, Anselmi F, Duval C, Elettrico L, Donna D, Conti L, Baev D, Natsuga K, Hagai T, Oliviero S, Donati G
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Submission date Dec 20, 2022
Last update date Feb 02, 2023
Contact name Andrea Lauria
E-mail(s) andrea.lauria@unito.it
Organization name University of Turin
Department Life Sciences and Systems Biology
Lab Functional Genomics, Epigenomics - S. Oliviero
Street address Via Accademia Albertina, 13
City Turin
ZIP/Postal code 10123
Country Italy
 
Platforms (1)
GPL32159 NextSeq 1000 (Mus musculus)
Samples (14)
GSM6865288 8wpw1_Ctrl1_rep1
GSM6865289 8wpw1_Ctrl1_rep2
GSM6865290 8wpw1_Ctrl1_rep3
This SubSeries is part of SuperSeries:
GSE197590 Wound memory of epidermal stem cells
Relations
BioProject PRJNA914252

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE221403_bulk_memory_rawcounts.txt.gz 615.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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