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GEO accession:
Series GSE22211
Query DataSets for GSE22211
Status
Public on Jul 06, 2010
Title
Genome-wide nucleosome position data for 12 yeast species
Organisms
Lachancea waltii
;
Saccharomyces bayanus
;
Saccharomyces cerevisiae
;
Yarrowia lipolytica
;
Debaryomyces hansenii
;
Candida albicans
;
Nakaseomyces glabratus
;
Naumovozyma castellii
;
Saccharomyces paradoxus
;
Kluyveromyces lactis
;
Saccharomyces mikatae
;
Lachancea kluyveri NRRL Y-12651
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Summary
We mapped nucleosome positions genome-wide in 12 Ascomycetes
Overall design
Illumina sequencing of mononucleosomal DNA isolated from mid-log cultures grown in rich medium (abbreviated CM, in house recipe)
Contributor(s)
Tsankov A
,
Rando O
,
Regev A
Citation(s)
20625544
Submission date
Jun 08, 2010
Last update date
May 15, 2019
Contact name
Alex M Tsankov
E-mail(s)
atsankov@mit.edu
Phone
6172532442
Fax
6172532442
Organization name
MIT
Street address
155 Bay State
City
Boston
State/province
MA
ZIP/Postal code
02215
Country
USA
Platforms (12)
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GPL9131
Illumina Genome Analyzer (Naumovia castellii)
GPL9133
Illumina Genome Analyzer (Candida albicans)
GPL9134
Illumina Genome Analyzer (Saccharomyces cerevisiae)
GPL9135
Illumina Genome Analyzer (Saccharomyces bayanus)
GPL9546
Illumina Genome Analyzer (Saccharomyces paradoxus)
GPL10506
Illumina Genome Analyzer (Saccharomyces mikatae)
GPL10507
Illumina Genome Analyzer (Lachancea waltii)
GPL10508
Illumina Genome Analyzer (Candida glabrata)
GPL10509
Illumina Genome Analyzer (Debaryomyces hansenii)
GPL10510
Illumina Genome Analyzer (Kluyveromyces lactis)
GPL10511
Illumina Genome Analyzer (Saccharomyces kluyveri NRRL Y-12651)
GPL10512
Illumina Genome Analyzer (Yarrowia lipolytica)
Samples (13)
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GSM552907
Saccharomyces mikatae genome-wide nucleosome data
GSM552908
Saccharomyces bayanus genome-wide nucleosome data
GSM552909
Saccharomyces castellii genome-wide nucleosome data
GSM552910
Saccharomyces cerevisiae genome-wide nucleosome data
GSM552911
Kluyveromyces waltii genome-wide nucleosome data
GSM552912
Saccharomyces paradoxus genome-wide nucleosome data
GSM552913
Candida glabrata genome-wide nucleosome data Jan2809
GSM552914
Candida glabrata genome-wide nucleosome data Dec0908
GSM552915
Candida albicans genome-wide nucleosome data
GSM552916
Debaryomyces hansenii genome-wide nucleosome data
GSM552917
Kluyveromyces lactis genome-wide nucleosome data
GSM552918
Saccharomyces kluyveryii genome-wide nucleosome data
GSM552919
Yarrowia lipolytica genome-wide nucleosome data
This SubSeries is part of SuperSeries:
GSE21960
The role of nucleosome positioning in the evolution of gene regulation
Relations
SRA
SRP002812
BioProject
PRJNA128881
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE22211_RAW.tar
344.4 Mb
(http)
(custom)
TAR (of TXT, WIG)
SRA Run Selector
Processed data provided as supplementary file
Raw data are available in SRA
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