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Series GSE222527 Query DataSets for GSE222527
Status Public on Jul 14, 2023
Title KSHV-induced iNOS in Kaposi’s Sarcoma tumors and mouse model
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Kaposi’s Sarcoma (KS) is a heterogenous, multifocal vascular malignancy caused by the human herpesvirus 8 (HHV8), also known as Kaposi’s Sarcoma-Associated Herpesvirus (KSHV). Here, we show that KS lesions express iNOS/NOS2 broadly throughout KS lesions, with enrichment in LANA positive spindle cells. The iNOS byproduct 3-nitrotyrosine is also enriched in LANA positive tumor cells and colocalizes with a fraction of LANA-nuclear bodies. We show that iNOS is highly expressed in the L1T3 tumor model of KS. iNOS expression correlated with KSHV lytic cycle gene expression, which was elevated in late-stage tumors (>4 weeks) but to a lesser degree in early stage (1 week) xenografts. Further, we show that L1T3 tumor growth is sensitive to an inhibitor of nitric oxide, L-NMMA. These finding suggest that iNOS is expressed in KSHV infected endothelial-transformed tumor cells in KS, that iNOS expression depends on tumor microenvironment stress conditions, and that iNOS enzymatic activity contributes to KS tumor growth.
 
Overall design RNA-seq of L1T3 tumors with and without inhibitor of nitric oxide, L-NMMA (NG-methyl L-arginine)
 
Contributor(s) Vladimirova O, Lieberman P
Citation(s) 36863485
Submission date Jan 10, 2023
Last update date Jul 14, 2023
Contact name Priyankara J Wickramasinghe
E-mail(s) priyaw@wistar.org
Phone 2154956837
Organization name The Wistar Institute
Department Bioinformatics
Lab Genomics
Street address 3601 Spruce Street
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (4)
GSM6925483 L1T3 tumor unt.1A
GSM6925484 L1T3 tumor unt.3B
GSM6925485 L1T3 tumor trt.2E
Relations
BioProject PRJNA922466

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE222527_L1T3_RNAseq.txt.gz 274.4 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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