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Series GSE222897 Query DataSets for GSE222897
Status Public on Jan 18, 2023
Title NGS of phage antibody outputs from whole-cell panning
Organism Oryctolagus cuniculus
Experiment type Other
Summary We present a target-unbiased approach for antibody discovery that relies on generating mAbs against native target cell surfaces via phage display. This method combines a previously reported method for improved whole-cell phage display selections with next-generation sequencing analysis to efficiently identify mAbs with the desired target cell reactivity. This approach enabled the identification of three multiple myeloma cell surface antigens, and cognate monoclonal antibody probes.
 
Overall design Rabbit phage antibody libraries were selected against human multiple myeloma cell lines, HEK293-ROR1-TetOn cells, and healthy donor-derived human PBMCs using the Fab-phage Biotinylation and Capture (FBC) method. Selected antibody outputs were subjected to NGS analysis for HCDR3 profiling.
Web link https://pubmed.ncbi.nlm.nih.gov/37019174/
 
Contributor(s) Wilson HD
Citation(s) 37019174
Submission date Jan 14, 2023
Last update date Apr 19, 2023
Contact name Henry Wilson
E-mail(s) hedawils@gmail.com
Organization name The Scripps Research Institute
Lab Rader
Street address 130 Scripps Way
City Jupiter
State/province FL
ZIP/Postal code 33458
Country USA
 
Platforms (1)
GPL28443 Illumina MiSeq (Oryctolagus cuniculus)
Samples (21)
GSM6934841 H929 FBC selection rep 1
GSM6934842 H929 FBC selection rep 2
GSM6934843 H929 FBC selection rep 3
Relations
BioProject PRJNA923794

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE222897_H929_v_PBMCs_processed_output.txt.gz 4.7 Mb (ftp)(http) TXT
GSE222897_HEK293_ROR1pos_v_ROR1neg_FBC_processed_output.txt.gz 3.1 Mb (ftp)(http) TXT
GSE222897_HEK293_ROR1pos_v_ROR1neg_conventional_processed_output.txt.gz 5.2 Mb (ftp)(http) TXT
GSE222897_RAW.tar 4.2 Mb (http)(custom) TAR (of TXT)
GSE222897_U266_v_PBMCs_processed_output.txt.gz 4.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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