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Series GSE223299 Query DataSets for GSE223299
Status Public on May 19, 2023
Title Stressing Out Epigenetics: A Profile of the Global Effects of Stress on DNA Modifications in the Brain (ChIP-Seq)
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary Differential 5mC and 5hmC regions across different social defeat conditions were correlated to paired RNAseq data in order to elucidate the epigenetic contribution to differences in stress response.
 
Overall design 5mC and 5hmC were enrihced from mouse cortex
 
Contributor(s) Kuehner J, Yao B
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jan 19, 2023
Last update date May 20, 2023
Contact name Bing Yao
E-mail(s) bing.yao@emory.edu
Phone 3523596473
Organization name Emory University
Department Department of Human Genetics
Street address 615 Michael Street
City Atlanta
ZIP/Postal code 30322
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (46)
GSM6944651 Input.Control.CX
GSM6944652 Input.Stress.CX
GSM6944653 hmC.CSDS.C.CX.2
This SubSeries is part of SuperSeries:
GSE223301 Stressing Out Epigenetics: A Profile of the Global Effects of Stress on DNA Modifications in the Brain
Relations
BioProject PRJNA925544

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE223299_RAW.tar 30.2 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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