 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jan 29, 2024 |
| Title |
The chromatin factors SET-26 and HCF-1 oppose the histone deacetylase HDA-1 in longevity and gene regulation in C. elegans |
| Organism |
Caenorhabditis elegans |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
38485937 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 AG024425 |
Genetic and Epigenetic Determinants of Longevity |
Cornell University |
Siu Sylvia Lee |
|
| |
| Submission date |
Jan 30, 2023 |
| Last update date |
Mar 20, 2024 |
| Contact name |
Siu Sylvia Lee |
| E-mail(s) |
leelabcornell@gmail.com
|
| Organization name |
Cornell University
|
| Street address |
520 Campus road
|
| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14850 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19757 |
Illumina NextSeq 500 (Caenorhabditis elegans) |
|
| Samples (113)
|
| GSM7011364 |
glp-1;set-26, L4440, day1, rep2 |
| GSM7011365 |
glp-1;hcf-1, L4440, day1, rep1 |
| GSM7011366 |
glp-1;hcf-1, L4440, day1, rep2 |
| GSM7011367 |
glp-1, L4440, day 3, rep1 |
| GSM7011368 |
glp-1, L4440, day 3, rep2 |
| GSM7011369 |
glp-1;set-26, L4440, day3, rep1 |
| GSM7011370 |
glp-1;set-26, L4440, day3, rep2 |
| GSM7011371 |
glp-1;hcf-1, L4440, day3, rep1 |
| GSM7011372 |
glp-1;hcf-1, L4440, day3, rep2 |
| GSM7011373 |
glp-1, hda-1 RNAi, day 3, rep1 |
| GSM7011374 |
glp-1, hda-1 RNAi, day 3, rep2 |
| GSM7011375 |
glp-1;set-26, hda-1 RNAi, day3, rep1 |
| GSM7011376 |
glp-1;set-26, hda-1 RNAi, day3, rep2 |
| GSM7011377 |
glp-1;hcf-1, hda-1 RNAi, day3, rep1 |
| GSM7011378 |
glp-1;hcf-1, hda-1 RNAi, day3, rep2 |
| GSM7011379 |
glp-1, L4440, day 12, rep1 |
| GSM7011380 |
glp-1, L4440, day 12, rep2 |
| GSM7011381 |
glp-1;set-26, L4440, day12, rep1 |
| GSM7011382 |
glp-1;set-26, L4440, day12, rep2 |
| GSM7011383 |
glp-1;hcf-1, L4440, day12, rep1 |
| GSM7011384 |
glp-1;hcf-1, L4440, day12, rep2 |
| GSM7011385 |
glp-1, hda-1 RNAi, day 12, rep1 |
| GSM7011386 |
glp-1, hda-1 RNAi, day 12, rep2 |
| GSM7011387 |
glp-1;set-26, hda-1 RNAi, day12, rep1 |
| GSM7011388 |
glp-1;set-26, hda-1 RNAi, day12, rep2 |
| GSM7011389 |
glp-1;hcf-1, hda-1 RNAi, day12, rep1 |
| GSM7011390 |
glp-1;hcf-1, hda-1 RNAi, day12, rep2 |
| GSM7011391 |
Somatic SET-26 binding profile, germline-less glp-1(e2141) background, rep 1 |
| GSM7011392 |
Somatic SET-26 binding profile, germline-less glp-1(e2141) background, rep 2 |
| GSM7011393 |
Somatic HCF-1 binding profile, germline-less glp-1(e2141) background, rep 1 |
| GSM7011394 |
Somatic HCF-1 binding profile, germline-less glp-1(e2141) background, rep 2 |
| GSM7011395 |
H3 profile, normalization for somatic HCF-1 binding, germline-less glp-1(e2141) background, rep1 |
| GSM7011396 |
H3 profile, normalization for somatic HCF-1 profile, germline-less glp-1(e2141) background, rep2 |
| GSM7011397 |
Somatic HCF-1 binding profile in set-26(tm2467) mutant, germline-less glp-1(e2141) background, rep1 |
| GSM7011398 |
Somatic HCF-1 binding profile in set-26(tm2467) mutant, germline-less glp-1(e2141) background, rep2 |
| GSM7011399 |
H3 profile, normalization for somatic HCF-1 profile in set-26(tm2467) mutant, germline-less glp-1(e2141) backgrnd, rep1 |
| GSM7011400 |
H3 profile, normalization for somatic HCF-1 profile in set-26(tm2467) mutant, germline-less glp-1(e2141) backgrnd, rep2 |
| GSM7011401 |
Somatic HDA-1 binding profile, germline-less glp-1(e2141) background, rep 1 |
| GSM7011402 |
Somatic HDA-1 binding profile, germline-less glp-1(e2141) background, rep 2 |
| GSM7011403 |
Antibody background, HA, germline-less glp-1(e2141) background, rep 1 |
| GSM7011404 |
Antibody background, HA, germline-less glp-1(e2141) background, rep 2 |
| GSM7011405 |
Antibody background, FLAG, germline-less glp-1(e2141) background, rep 1 |
| GSM7011406 |
Antibody background , FLAG, germline-less glp-1(e2141) background, rep 2 |
| GSM7011407 |
Whole worm SET-26 binding profile, rep 1 |
| GSM7011408 |
Whole worm SET-26 binding profile, rep 2 |
| GSM7011409 |
Whole worm HCF-1 binding profile, rep 1 |
| GSM7011410 |
Whole worm HCF-1 binding profile, rep 2 |
| GSM7011411 |
Whole worm HDA-1 binding profile, rep 1 |
| GSM7011412 |
Whole worm HDA-1 binding profile, rep 2 |
| GSM7011413 |
Antibody background, HA, whole worm background, rep 1 for SET-26 profile |
| GSM7011414 |
Antibody background, HA, whole worm background, rep 1 for HDA-1 profile |
| GSM7011415 |
Antibody background, HA, whole worm background, rep 2 |
| GSM7011416 |
Antibody background, FLAG, whole worm background, rep 1 |
| GSM7011417 |
Antibody background, FLAG, whole worm background, rep 2 |
| GSM7011418 |
Somatic HCF-1 binding profile, germline-less glp-1 RNAi, rep 1 |
| GSM7011419 |
Somatic HCF-1 binding profile, germline-less glp-1 RNAi, rep 2 |
| GSM7011420 |
H3 profile, normalization for somatic HCF-1 binding, germline-less glp-1 RNAi, rep1 |
| GSM7011421 |
H3 profile, normalization for somatic HCF-1 binding, germline-less glp-1 RNAi, rep2 |
| GSM7011422 |
Somatic HCF-1 binding profile in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011423 |
Somatic HCF-1 binding profile in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011424 |
H3 profile, normalization for somatic HCF-1 binding in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011425 |
H3 profile, normalization for somatic HCF-1 binding in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011426 |
Whole worm HCF-1 binding profile, L4440, rep1 |
| GSM7011427 |
Whole worm HCF-1 binding profile, L4440, rep2 |
| GSM7011428 |
H3 profile, normalization for whole worm HCF-1 binding profile, L4440, rep1 |
| GSM7011429 |
H3 profile, normalization for whole worm HCF-1 binding profile, L4440, rep2 |
| GSM7011430 |
Whole worm HCF-1 binding profile in set-26(tm2467) mutant, L4440, rep1 |
| GSM7011431 |
Whole worm HCF-1 binding profile in set-26(tm2467) mutant, L4440, rep2 |
| GSM7011432 |
H3 profile, normalization for whole worm HCF-1 binding profile in set-26(tm2467) mutant, L4440, rep1 |
| GSM7011433 |
H3 profile, normalization for whole worm HCF-1 binding profile in set-26(tm2467) mutant, L4440, rep2 |
| GSM7011434 |
Somatic SET-26 binding profile, germline-less glp-1 RNAi, rep1 |
| GSM7011435 |
Somatic SET-26 binding profile, germline-less glp-1 RNAi, rep2 |
| GSM7011436 |
H3 profile, normalization for somatic SET-26 binding, germline-less glp-1 RNAi, rep1 |
| GSM7011437 |
H3 profile, normalization for somatic SET-26 binding, germline-less glp-1 RNAi, rep2 |
| GSM7011438 |
Somatic SET-26 binding profile in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011439 |
Somatic SET-26 binding profile in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011440 |
H3 profile, normalization for somatic SET-26 binding in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011441 |
H3 profile, normalization for somatic SET-26 binding in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011442 |
Whole worm SET-26 binding profile, L4440, rep1 |
| GSM7011443 |
Whole worm SET-26 binding profile, L4440, rep2 |
| GSM7011444 |
H3 profile, normalization for whole worm SET-26 binding, L4440, rep1 |
| GSM7011445 |
H3 profile, normalization for whole worm SET-26 binding, L4440, rep2 |
| GSM7011446 |
Whole worm SET-26 binding profile in hcf-1(pk924) mutant, L4440, rep1 |
| GSM7011447 |
Whole worm SET-26 binding profile in hcf-1(pk924) mutant, L4440, rep2 |
| GSM7011448 |
H3 profile, normalization for whole worm SET-26 binding in hcf-1(pk924) mutant, L4440, rep1 |
| GSM7011449 |
H3 profile, normalization for whole worm SET-26 binding in hcf-1(pk924) mutant, L4440, rep2 |
| GSM7011450 |
Somatic HDA-1 binding profile, germline-less glp-1 RNAi, rep1 |
| GSM7011451 |
Somatic HDA-1 binding profile, germline-less glp-1 RNAi, rep2 |
| GSM7011452 |
H3 profile, normalization for somatic HDA-1 binding, germline-less glp-1 RNAi, rep1 |
| GSM7011453 |
H3 profile, normalization for somatic HDA-1 binding, germline-less glp-1 RNAi, rep2 |
| GSM7011454 |
Somatic HDA-1 binding profile in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011455 |
Somatic HDA-1 binding profile in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011456 |
H3 profile, normalization for somatic HDA-1 binding in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011457 |
H3 profile, normalization for somatic HDA-1 binding in set-26(tm2467) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011458 |
Somatic HDA-1 binding profile in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011459 |
Somatic HDA-1 binding profile in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011460 |
H3 profile, normalization for somatic HDA-1 binding in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep1 |
| GSM7011461 |
H3 profile, normalization for somatic HDA-1 binding in hcf-1(pk924) mutant, germline-less glp-1 RNAi, rep2 |
| GSM7011462 |
Whole worm HDA-1 binding profile, L4440, rep1 |
| GSM7011463 |
Whole worm HDA-1 binding profile, L4440, rep2 |
| GSM7011464 |
H3 profile, normalization for whole worm HDA-1 binding profile, L4440, rep1 |
| GSM7011465 |
H3 profile, normalization for whole worm HDA-1 binding profile, L4440, rep2 |
| GSM7011466 |
Whole worm HDA-1 binding profile in set-26(tm2467) mutants, L4440, rep1 |
| GSM7011467 |
Whole worm HDA-1 binding profile in set-26(tm2467) mutants, L4440, rep2 |
| GSM7011468 |
H3 profile, normalization for whole worm HDA-1 binding profile in set-26(tm2467) mutants, L4440, rep1 |
| GSM7011469 |
H3 profile, normalization for whole worm HDA-1 binding profile in set-26(tm2467) mutants, L4440, rep2 |
| GSM7011470 |
Whole worm HDA-1 binding profile in hcf-1(pk924) mutants, L4440, rep1 |
| GSM7011471 |
Whole worm HDA-1 binding profile in hcf-1(pk924) mutants, L4440, rep2 |
| GSM7011472 |
H3 profile, normalization for whole worm HDA-1 binding profile in hcf-1(pk924) mutants, L4440, rep1 |
| GSM7011473 |
H3 profile, normalization for whole worm HDA-1 binding profile in hcf-1(pk924) mutants, L4440, rep2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE224075 |
The chromatin factors SET-26 and HCF-1 oppose the histone deacetylase HDA-1 in longevity and gene regulation in C. elegans [RNA-Seq] |
| GSE224076 |
The chromatin factors SET-26 and HCF-1 oppose the histone deacetylase HDA-1 in longevity and gene regulation in C. elegans [CUT&RUN] |
|
| Relations |
| BioProject |
PRJNA929524 |
|
|
|
|
 |
Less...
More...