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| Status |
Public on Feb 10, 2023 |
| Title |
Identifying potential hepatic genes regulating the ovine response to gastrointestinal nematodes using RNA-Sequencing |
| Organism |
Ovis aries |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Gastrointestinal nematode (GIN) infections are considered the most important disease of grazing sheep. Due to increasing anthelmintic resistance, chemical control alone is inadequate. Resistance to GIN infection is a heritable trait, and through natural selection many sheep breeds have higher resistance. Studying the transcriptome from GIN-exposed and GIN-unexposed sheep using RNA-Sequencing technology can provide measurements of transcript levels associated with the host response to GIN infection, and these transcripts may harbor genetic markers that can be used in selective breeding programs to enhance disease resistance. The objective of this study was to compare liver transcriptomes of sheep naturally exposed to GINs, with either high or low parasite burdens, to GIN-unexposed control sheep in order to identify key regulator genes and biological processes associated with GIN infection. Differential gene expression analysis revealed no significant differentially expressed genes (DEG) between sheep with a high or low parasite burden (P-value ≤ 0.01; False Discovery Rate (FDR) ≤ 0.05; and Fold-Change (FC) of > 2). However, when compared to the control group, low parasite burden sheep showed 159 DEG, and high parasite burden sheep showed 146 DEG (P-value ≤ 0.01; FDR ≤ 0.05; and FC of > 2). Among these two lists of significant DEG, 86 DEG were found in common between the two parasite burden groups compared to the control (GIN-unexposed sheep). Functional analysis of these significant 86 DEG found upregulated genes involved in immune response and downregulated genes involved in lipid metabolism. Results of this study offer insight into the liver transcriptome during natural GIN exposure that helps provide a better understanding of the key regulator genes involved in GIN infection in sheep.
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| Overall design |
Compare liver transcriptomes of sheep naturally exposed to GINs, with either high (n=6) or low (n=5) parasite burdens, to GIN-unexposed control sheep (n=4).
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| Contributor(s) |
Dixon S, Karrow NA, Borkowski E, Suarez-Vega A, Menzies PI, Kennedy D, Peregrine AS, Mallard BA, Cánovas Á |
| Citation(s) |
36873933 |
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| Submission date |
Feb 09, 2023 |
| Last update date |
Jun 14, 2023 |
| Contact name |
Samantha Dixon |
| Organization name |
University of Guelph
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| Department |
Animal Biosciences
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| Lab |
Centre for Genetic Improvement of Livestock
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| Street address |
50 Stone Rd E
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| City |
Guelph |
| State/province |
Ontario |
| ZIP/Postal code |
N1G 2W1 |
| Country |
Canada |
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| Platforms (1) |
| GPL15670 |
Illumina HiSeq 2000 (Ovis aries) |
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| Samples (15)
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| Relations |
| BioProject |
PRJNA933145 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE224936_CvH.xlsx |
205.9 Kb |
(ftp)(http) |
XLSX |
| GSE224936_CvInfected.xlsx |
346.3 Kb |
(ftp)(http) |
XLSX |
| GSE224936_CvM.xlsx |
245.2 Kb |
(ftp)(http) |
XLSX |
| GSE224936_DESeqControlvsHigh.xlsx |
132.7 Kb |
(ftp)(http) |
XLSX |
| GSE224936_DESeqControlvsLow.xlsx |
58.0 Kb |
(ftp)(http) |
XLSX |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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