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Series GSE224963 Query DataSets for GSE224963
Status Public on Oct 26, 2023
Title Chromatin state transitions in the Drosophila intestinal lineage reveal principles of cell type specification [ATAC-seq]
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To investigate the chromatin state into an adult stem cell lineage, we generate cell-type specific chromatin state maps in the adult Drosophila intestine and identify principal chromatin state transitions during lineage determination.
we profiled the binding sites of five chromatin-associated proteins from which the previously described five major types of chromatin.
 
Overall design Comparative chromatin accessibility (ATAC-seq) as well as gene expression (RNA-seq) in Drosophila ISC/EB in control and H1 RNAi conditions
 
Contributor(s) Josserand M, Rubanova N, Gervais L, Bardin AJ
Citation(s) 38056452
Submission date Feb 09, 2023
Last update date Jan 25, 2024
Contact name Allison Bardin
E-mail(s) allison.bardin@curie.fr
Organization name Institut Curie
Street address 26 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platforms (1)
GPL25244 Illumina NovaSeq 6000 (Drosophila melanogaster)
Samples (6)
GSM7036274 ISC/EB ATACseq control A
GSM7036275 ISC/EB ATACseq control B
GSM7036276 ISC/EB ATACseq control C
This SubSeries is part of SuperSeries:
GSE224967 Chromatin state transitions in the Drosophila intestinal lineage reveal principles of cell type specification
Relations
BioProject PRJNA933191

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE224963_RAW.tar 1.3 Mb (http)(custom) TAR (of NARROWPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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