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Series GSE225059 Query DataSets for GSE225059
Status Public on May 03, 2024
Title Combination of a SOS1-KRAS interaction inhibitor with a KRASG12C inhibitor combination can address intrinsic and acquired resistance leading to stronger and more durable response (Quant-Seq).
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the transcriptomic changes associated with KRAS G12C inhibitor Adagrasib resistance and Adagrasib + SOS1 inhibitor (BI-3406) or Adagrasib + EGFR inhibitor (Cetuximab) combination treatment to overcome resistance.
We performed differential gene expression analysis using RNA-seq generated from cell line derived xenograft (CDX) in vivo models. We compared different treatment conditions with DMSO treated condition.
 
Overall design CDX models were generated using NSCLC cell line NCI-H2122 and CRC cell line SW837. For each CDX category, expression data with DMSO treated and either single agent and combination treatment was generated.
 
Contributor(s) Thatikonda V, Gerlach D, Bergner O, Alpar D, Hofmann M
Citation(s) 39103541
Submission date Feb 10, 2023
Last update date Aug 08, 2024
Contact name Daniel Gerlach
E-mail(s) daniel.gerlach@boehringer-ingelheim.com
Organization name Boehringer Ingelheim RCV GmbH & Co KG
Department Global Computational Biology and Digital Sciences
Street address Dr.-Boehringer-Gasse 5-11
City Vienna
ZIP/Postal code 1121
Country Austria
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (97)
GSM7038456 SW837_Vehicle_A2
GSM7038457 SW837_Vehicle_A3
GSM7038458 SW837_Vehicle_A4
This SubSeries is part of SuperSeries:
GSE225061 Combination of a SOS1-KRAS interaction inhibitor with a KRASG12C inhibitor combination can address intrinsic and acquired resistance leading to stronger and more durable response
Relations
BioProject PRJNA934579

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225059_RAW.tar 17.7 Mb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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