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Series GSE225419 Query DataSets for GSE225419
Status Public on Feb 27, 2024
Title Exploring the diversity and antibiogram of the soil around a tertiary care hospital and a university precinct in southern In-dia: A pilot study
Organism Bacteria
Experiment type Other
Summary This study identified and compared the bacterial diversity and the antimicrobial resistance profile of clinically relevant isolates around a newly developed hospital and university precinct
 
Overall design Soil samples were taken from eight plots next to a Hospital and University in India. The samples underwent 16S sequecing and culturing for testing antibiotic resistance.
 
Contributor(s) Kunhikannan S, Stanton CR, Rose J, Franks AE, MN S S, Kumar S, Petrovski S, Shindler A, Thomas CJ
Citation Kunhikannan S, Stanton CR, Rose J, Thomas CJ, Franks AE, Neelambike SM, Kumar S, Petrovski S, and Shindler AE. Exploring the Diversity and Antibiogram of the Soil around a Tertiary Care Hospital and a University Precinct in Southern India: A Pilot Study. Soil Systems 2023; 7(2):45. doi:10.3390/soilsystems7020045
Submission date Feb 16, 2023
Last update date Feb 27, 2024
Contact name Anya Shindler
E-mail(s) a.shindler@latrobe.edu.au
Phone 0410302550
Organization name La Trobe University
Street address 1 Kingsbury Drive
City Bundoora
State/province VIC
ZIP/Postal code 3083
Country Australia
 
Platforms (1)
GPL24661 Illumina MiSeq (Bacteria)
Samples (8)
GSM7048287 Pilot1 Soil Community DNA Seqeunces from Indian Hospital
GSM7048288 Pilot2 Soil Community DNA Seqeunces from Indian Hospital
GSM7048289 Pilot3 Soil Community DNA Seqeunces from Indian University
Relations
BioProject PRJNA935944

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225419_POTU.csv.gz 4.4 Kb (ftp)(http) CSV
GSE225419_PSamples.csv.gz 192 b (ftp)(http) CSV
GSE225419_PTax.csv.gz 10.7 Kb (ftp)(http) CSV
GSE225419_metadata_Pilot.txt.gz 101 b (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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