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Series GSE225889 Query DataSets for GSE225889
Status Public on Sep 26, 2023
Title Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus
Organisms Drosophila ananassae; Drosophila erecta; Drosophila melanogaster; Drosophila mojavensis; Drosophila persimilis; Drosophila pseudoobscura; Drosophila simulans; Drosophila subobscura; Drosophila virilis; Drosophila yakuba; Drosophila azteca; Drosophila suzukii; Drosophila takahashii; Drosophila ficusphila; Drosophila biarmipes
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 37957172
Submission date Feb 22, 2023
Last update date Dec 06, 2023
Contact name Susanne Bornelöv
E-mail(s) susanne.bornelov@cruk.cam.ac.uk
Organization name University of Cambridge
Department Cancer Research UK - Cambridge Institute
Lab Hannon
Street address Robinson Way
City Cambridge
ZIP/Postal code CB2 0RE
Country United Kingdom
 
Platforms (20)
GPL22420 Illumina MiSeq (Drosophila pseudoobscura)
GPL25244 Illumina NovaSeq 6000 (Drosophila melanogaster)
GPL32718 Illumina NovaSeq 6000 (Drosophila virilis)
Samples (118)
GSM7059808 Dana.ovary.1
GSM7059809 Dana.ovary.2
GSM7059810 Dana.ovary.3
This SuperSeries is composed of the following SubSeries:
GSE225887 Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [RNA-Seq]
GSE225888 Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [small RNA-Seq]
GSE240910 Unistrand piRNA clusters are an evolutionarily conserved mechanism to suppress endogenous retroviruses across the Drosophila genus [ATAC-Seq]
Relations
BioProject PRJNA937771

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE225889_RAW.tar 8.8 Gb (http)(custom) TAR (of BW, NARROWPEAK)
SRA Run SelectorHelp
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