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Series GSE227533 Query DataSets for GSE227533
Status Public on Nov 02, 2023
Title Spatial transcriptomics on Zika virus infected fetal brains of nonhuman primates
Organism Macaca nemestrina
Experiment type Other
Expression profiling by high throughput sequencing
Summary Investigation of spatial transcriptomic responses of nonhuman primate fetal brains during development
 
Overall design Identification of regional transcriptomic responses to Zika virus in fetal brains of non human primates
Please note that In the count and norm matrix contains the data for the samples used for the analysis which passed the min limit of quantification of 2
 
Contributor(s) Tisoncik-Go J, Whitmore LS, Gustin A, Stokes C, Gale M Jr
Citation(s) 38890352
Submission date Mar 16, 2023
Last update date Jul 19, 2024
Contact name Michael Gale, Jr
E-mail(s) uw_galelab_geo@uw.edu
Organization name University of Washington
Department Immunology
Street address 750 Republican St. E360, Box 358059
City Seattle
State/province Washington
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL33261 Illumina NovaSeq 6000 (Macaca nemestrina)
Samples (141)
GSM7102221 Animal Z1 Deep White Matter ROI 46
GSM7102222 Animal Z1 Deep White Matter ROI 47
GSM7102223 Animal Z1 Deep White Matter ROI 48
Relations
BioProject PRJNA945463

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227533_Hs_R_NGS_WTA_v1.0.pkc.gz 1.9 Mb (ftp)(http) PKC
GSE227533_RAW.tar 8.4 Mb (http)(custom) TAR (of DCC)
GSE227533_countsAOIfilter25.csv.gz 192.5 Kb (ftp)(http) CSV
GSE227533_countsROI_matrix.csv.gz 1018.3 Kb (ftp)(http) CSV
GSE227533_normAOI_matrix.csv.gz 291.4 Kb (ftp)(http) CSV
GSE227533_normROI_matrix.csv.gz 3.8 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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