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Series GSE227806 Query DataSets for GSE227806
Status Public on Mar 25, 2024
Title Gene expression profile at single cell level of zebrafish trunk from WT or flt1 mutant (3dpf).
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary scRNA-seq was used to investigate neurovascular cross-talk in zebrafish trunk.
 
Overall design Zebrafish trunk of WT and flt1 mutant were dissected, dissociated and processed for single cell RNA-Seq using 10X Genomics Chromium droplet based system
 
Contributor(s) Preau L
Citation(s) 38600061
Submission date Mar 21, 2023
Last update date Apr 24, 2024
Contact name Laetitia Preau
E-mail(s) laetitia.preau@kit.edu
Organization name Karlsruhe Institute of Technology (KIT)
Street address Fritz Haber Weg 4
City Karlsruhe
ZIP/Postal code 76131
Country Germany
 
Platforms (1)
GPL30614 NextSeq 2000 (Danio rerio)
Samples (4)
GSM7108416 WT, replicate 1, scRNAseq trunk
GSM7108417 flt1mut, replicate 1, scRNAseq trunk
GSM7108418 WT, replicate 2, scRNAseq trunk
This SubSeries is part of SuperSeries:
GSE227807 Gene expression profile at single cell level of WT or flt1 mutant
Relations
BioProject PRJNA947108

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227806_RAW.tar 136.0 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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