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Series GSE228061 Query DataSets for GSE228061
Status Public on Mar 24, 2023
Title Population-level antagonism between FGF and BMP signaling steers mesoderm differentiation in embryonic stem cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The mesodermal precursor populations for different internal organ systems are specified during gastrulation by the combined activity of extracellular signaling systems such as BMP, Wnt, Nodal, and FGF. The BMP, Wnt and Nodal signaling requirements for the differentiation of specific mesoderm subtypes in mammals have been mapped in detail, but which mesodermal cell types depend on FGF signaling is not precisely known. It is also not clear how FGF signaling modulates the activity of orthogonal signaling systems involved in mesoderm differentiation. Here, we address these questions by analyzing the effects of targeted signaling manipulations in differentiating stem cell populations with single cell resolution. We identify opposing functions of BMP and FGF, and map the boundary between FGF-dependent and -independent mesodermal lineages. Stimulation with exogenous FGF boosts the expression of endogenous Fgfs while repressing Bmp ligands. This intercellular positive autoregulation of FGF signaling coupled to the repression of BMP signaling may contribute to the specification of reproducible and coherent cohorts of cells with the same identity via a community effect, both in the embryo and in synthetic embryo-like systems.
 
Overall design Mouse epiblast stem cells were differentiated towards a mix of mesodermal cell types in N2B27 medium supplemented with BMP4, CHIR99201 and different doses of FGF2 or the FGF receptor inhibitor AZD4547, and analyzed by scRNAseq.
Web link https://doi.org/10.1242/bio.059941
 
Contributor(s) Gattiglio M, Protzek M, Schröter C
Citation(s) 37530863
Submission date Mar 23, 2023
Last update date Aug 07, 2023
Contact name Christian Schröter
E-mail(s) christian.schroeter@mpi-dortmund.mpg.de
Phone +492311332223
Organization name MPI of Molecular Physiology
Department Systemic Cell Biology
Street address Otto-Hahn-Str. 11
City Dortmund
State/province Nordrhein-Westfalen
ZIP/Postal code 44227
Country Germany
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (5)
GSM7113372 EpiSC 0
GSM7113373 EpiSC 3
GSM7113374 EpiSC 12
Relations
BioProject PRJNA947968

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228061_RAW.tar 212.7 Mb (http)(custom) TAR (of MTX, TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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