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Series GSE228096 Query DataSets for GSE228096
Status Public on May 30, 2023
Title Epicardial Placement of Human Placental Membrane Protects from Heart Injury in a Swine Model of Myocardial Infarction
Organism Sus scrofa domesticus
Experiment type Expression profiling by high throughput sequencing
Summary Introduction: Cardiac ischemic reperfusion injury (IRI) is paradoxically instigated by re-establishing blood-flow to ischemic myocardium typically from a myocardial infarction (MI). Although revascularization following MI remains the standard of care, effective strategies remain limited to prevent or attenuate IRI. We hypothesized that epicardial placement of human placental amnion/chorion (HPAC) grafts will protect against IRI. Methods: Using a clinically relevant model of IRI, swine were subjected to 45 minutes percutaneous ischemia followed with (MI+HPAC, n=3) or without (MI only, n=3) HPAC. Cardiac function was assessed by echocardiography, and regional punch biopsies were collected 14 days post-operatively. A deep phenotyping approach was implemented by using histological interrogation and incorporating global proteomics and transcriptomics in non-ischemic, ischemic, and border zone biopsies. Results: Our results established HPAC limited the extent of cardiac injury by 50% (11.02.0% vs 22.03.0%, p=0.039) and preserved ejection fraction in HPAC-treated swine (46.8±2.7% vs 35.8±4.5%, p=0.014). We present comprehensive transcriptome and proteome profiles of infarct (IZ), border (BZ), and remote (RZ) zone punch biopsies from swine myocardium during the proliferative cardiac repair phase 14 days post-MI. Both HPAC-treated and untreated tissues showed regional dynamic responses, whereas only HPAC-treated IZ revealed active immune and extracellular matrix remodeling. Decreased endoplasmic reticulum (ER)-dependent protein secretion and increased anti-apoptotic and anti-inflammatory responses were measured in HPAC-treated biopsies. Discussion: We provide quantitative evidence HPAC reduced cardiac injury from MI in a preclinical swine model, establishing a potential new therapeutic strategy for IRI.
 
Overall design comparative gene expression profiling analysis of RNA-seq data for porcine elicited or not elicited and myocardial infarction(MI) and treated(Tx) or untreated with HPAC.
 
Contributor(s) Skaria R, Lopez-Schultz M, Konhilas J
Citation(s) 37849042
Submission date Mar 23, 2023
Last update date Oct 26, 2023
Contact name Marissa Anne Lopez-Pier
E-mail(s) mal1@arizona.edu
Phone 5202718292
Organization name The University of Arizona
Department Physiology
Lab John Konhilas Lab
Street address 1656 E. Mabel St.
City Tucson
State/province AZ
ZIP/Postal code 85721
Country USA
 
Platforms (1)
GPL29562 Illumina NovaSeq 6000 (Sus scrofa domesticus)
Samples (27)
GSM7113854 Pig 9, control/sham_BZ
GSM7113855 Pig 9, control/sham_IZ
GSM7113856 Pig 9, control/sham_RZ
Relations
BioProject PRJNA948031

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE228096_processed_data_files.tar.gz 89.1 Mb (ftp)(http) TAR
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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