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| Status |
Public on Jun 14, 2023 |
| Title |
DNA methylation from human meningioma samples |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
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| Summary |
DNA methylation from human meningioma samples that were also profiled for spatial heterogeneity analysis. Some samples represent spatially distinct regions, punched using a 2mm core punch from FFPE blocks in a given tumor. Other samples represent serial tumor samples at index treatment and then recurrence.
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| Overall design |
The study cohort consisted of 16 samples from 10 clinically aggressive meningiomas that were resected from 9 patients.
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| Contributor(s) |
Lucas C, Raleigh D |
| Citation(s) |
37292686, 38760638 |
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| Submission date |
Mar 27, 2023 |
| Last update date |
Aug 08, 2024 |
| Contact name |
William Chen |
| Organization name |
UCSF
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| Street address |
1450 3rd Street, HD 402
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| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94158 |
| Country |
USA |
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| Platforms (1) |
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| Samples (16)
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| GSM7118683 |
Human meningioma, FFPE 4 |
| GSM7118684 |
Human meningioma, FFPE 5 |
| GSM7118685 |
Human meningioma, FFPE 6 |
| GSM7118686 |
Human meningioma, FFPE 7 |
| GSM7118687 |
Human meningioma, FFPE 8 |
| GSM7118688 |
Human meningioma, FFPE 9 |
| GSM7118689 |
Human meningioma, FFPE 10 |
| GSM7118690 |
Human meningioma, FFPE 11 |
| GSM7118691 |
Human meningioma, FFPE 12 |
| GSM7118692 |
Human meningioma, FFPE 13 |
| GSM7118693 |
Human meningioma, FFPE 14 |
| GSM7118694 |
Human meningioma, FFPE 15 |
| GSM7118695 |
Human meningioma, FFPE 16 |
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| Relations |
| BioProject |
PRJNA949629 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE228316_1721_Raleigh-Methylated_intensities-raw.txt.gz |
31.9 Mb |
(ftp)(http) |
TXT |
| GSE228316_1721_Raleigh-Unmethylated_intensities-raw.txt.gz |
31.3 Mb |
(ftp)(http) |
TXT |
| GSE228316_RAW.tar |
385.6 Mb |
(http)(custom) |
TAR (of IDAT) |
| Processed data included within Sample table |
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